PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g09840.1
Common NameOs08g0198400, OSNPB_080198400
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 815aa    MW: 91710.4 Da    PI: 6.2518
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g09840.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY361.4e-1152106258
                       --SS-EEEEEEE--TT-SS-..EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefp..rsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                       dDgy Wr  Gq + +g   p   s Y+C++a+C v+k v  +a     ve+ Y+g+Hnh
  LOC_Os08g09840.1  52 DDGYYWRMTGQSTTQGESSPtiLSHYQCAQANCVVQKTVAYTA----DVETFYRGRHNH 106
                       7**************987773369***************9988....5899******** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007743.9E-451108IPR003657WRKY domain
SuperFamilySSF1182901.44E-1051106IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-951106IPR003657WRKY domain
PROSITE profilePS5081110.31552106IPR003657WRKY domain
PfamPF031062.1E-952106IPR003657WRKY domain
PROSITE profilePS508089.308179244IPR003656Zinc finger, BED-type
SMARTSM006142.1E-14179230IPR003656Zinc finger, BED-type
PfamPF028921.3E-5182226IPR003656Zinc finger, BED-type
SuperFamilySSF576677.5E-7182229No hitNo description
SuperFamilySSF530985.23E-67332796IPR012337Ribonuclease H-like domain
PfamPF143722.1E-23573668IPR025525hAT-like transposase, RNase-H fold
PfamPF056994.1E-17722796IPR008906HAT, C-terminal dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 815 aa     Download sequence    Send to blast
MADQGFRPFS ALMSAPSTAQ QHVGSSFSTA VVQVAAAQQS HTDHGNICLA DDDGYYWRMT  60
GQSTTQGESS PTILSHYQCA QANCVVQKTV AYTADVETFY RGRHNHLRQS DRLEPMSQVG  120
VLVEASDAAG AAAGPSVPET ENGDDQSSGS SDRNEDDAGD VEMDEDAAAG DPNAMQRRKL  180
KSKVWKEFKL VFKDGKLHTA ICNHCKLRLV AETRNGTSHL RRHLKICPEK AGTSRVQKKR  240
RSSTSQSQPD LPVSENLENG QENPSQNLEN GQENPLEEFM RATVLKLCPF PAMYRASFAS  300
FLAGRNPAPN MVPQTTVEDK FISVYEKEKL KLKEKIIATP GGVFLSVNKW YSGSYETGIV  360
CLTVHFIDEE WKINRKTIRC CLSESDGLDL NLFPHWQSEI ANYEDDDKMV LKKVVRDWCL  420
EPKLLGVTLE GSVDKKATIS LEDDLTTGKN YLVAKCKLLT IPCMVDGLDD LMQYTVGREV  480
RSMWSRYMTN TPERKLKCQE VVSQLQLDRP SFGSKYRYLT FYWCEAALQF IKSFPLSNGS  540
ERPSLDDLEA TENFCKIARA IYHATKAFYE PYNLTFNSYF HVIWSLRATL QELPRIKNIE  600
RVIKVKNMQE KFDNHWKKWY LWLSIAVVLD PRYKLAFIEL RFREAFSQDA GTYISEVRAK  660
FYELYIQYSH VNEQSNEILN QGNNGSGTQI SAPLHKQRTN YTIAQAALEE FKELFEYLGG  720
GLCPQNDSFD ILKWWKDNSA AYPSLAKMAR DILAIPGCAV SAESAFNDDS DHRAELFNGK  780
LGPETTEALI CAQSWIIKSS GTADADNGNN ITLS*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA0A0P0XDB5
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g09840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g09840
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054160.0AP005416.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBb0094P23.
GenBankAP0054990.0AP005499.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0412D08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649908.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1
RefseqXP_015649909.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1
RefseqXP_015649910.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1
RefseqXP_015649911.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1
RefseqXP_015649912.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1
TrEMBLA0A0P0XDB50.0A0A0P0XDB5_ORYSJ; Os08g0198400 protein
STRINGORUFI08G06360.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140321024
Representative plantOGRP1143025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.17e-08WRKY family protein