PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g09690.1 | ||||||||
Common Name | LOC4344874, NF-Y18, Os08g0196700, OsHAP2A, OsJ_26347, OSNPB_080196700, P0035F08.38, P0412D08.16 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NF-YA | ||||||||
Protein Properties | Length: 194aa MW: 20752.3 Da PI: 10.0516 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 101.7 | 7.1e-32 | 82 | 137 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ep+YVNa+Qy++Il+RRq+Rak+e+e+k +k rkpylheSRh hAl+R+RgsgGrF LOC_Os08g09690.1 82 EPIYVNARQYHGILRRRQSRAKAESENKA-NKIRKPYLHESRHLHALKRARGSGGRF 137 8****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.0E-33 | 79 | 140 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.965 | 80 | 140 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 8.4E-27 | 82 | 137 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 8.5E-24 | 83 | 105 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 8.5E-24 | 114 | 137 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MKPDGETQLR PTAAGHPDPG LGTSSAEYVA SLGPATAPVS YPYISTYYGG TYGAYSGQPL 60 VNAALMAMPP HSVPLVTDAV VEPIYVNARQ YHGILRRRQS RAKAESENKA NKIRKPYLHE 120 SRHLHALKRA RGSGGRFLNS KAVEGKQDTK SVDKKDGAVP SEEKRDKKLA NSIIKLENSS 180 PTTQPGADAS DVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 4e-20 | 80 | 141 | 1 | 62 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.37238 | 0.0 | callus| leaf| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q6Z065 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g09690.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g09690 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB288027 | 0.0 | AB288027.1 Oryza sativa Japonica Group OsHAP2A mRNA for HAP2 subunit of HAP complex, complete cds. | |||
GenBank | AK059903 | 0.0 | AK059903.1 Oryza sativa Japonica Group cDNA clone:006-208-G09, full insert sequence. | |||
GenBank | HQ731479 | 0.0 | HQ731479.1 Oryza sativa Japonica Group NF-Y transcription factor 21 (NF-Y18) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648196.1 | 1e-139 | nuclear transcription factor Y subunit A-4 isoform X1 | ||||
Swissprot | Q84JP1 | 1e-36 | NFYA7_ARATH; Nuclear transcription factor Y subunit A-7 | ||||
TrEMBL | Q6Z065 | 1e-138 | Q6Z065_ORYSJ; HAP2 subunit of HAP complex | ||||
STRING | OS08T0196700-01 | 1e-139 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16558 | 13 | 13 | Representative plant | OGRP680 | 16 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34720.1 | 1e-36 | nuclear factor Y, subunit A4 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g09690.1 |
Entrez Gene | 4344874 |
Publications ? help Back to Top | |||
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