PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os08g08820.2 | ||||||||
Common Name | GL2-1, LOC4344832, Os08g0187500, P0020B10.22, P0547A06.49, ROC1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 785aa MW: 84615.4 Da PI: 5.5932 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.3 | 1.7e-20 | 107 | 163 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k+ LOC_Os08g08820.2 107 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 163 688999************************************************995 PP | |||||||
2 | START | 207.9 | 3.9e-65 | 299 | 519 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 ela +a++elv++a+++ep+W++ss ++++e+ + f+++ + ++ea+r +vv+m++ +lve+l+d++ q+ + + +a+ LOC_Os08g08820.2 299 ELAVAAMDELVQMAQLDEPLWSSSSepaaALLDEEEYARMFPRGLGpkqygLKSEASRHGAVVIMTHSNLVEILMDVN-QFATVFSsivsRAS 390 57899********************99999999********99888999*****************************.88888888888*** PP EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS START 81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166 t+ev+s+g galq+m++e+q++splvp R+++fvRy++ ++g+w++vdvS+ds ++ p v +++++pSg+li++++ng+skvtw LOC_Os08g08820.2 391 THEVLSTGvagnynGALQVMSMEFQVPSPLVPtRESYFVRYCKNNSDGTWAVVDVSLDSLRPSP----VQKCRRRPSGCLIQEMPNGYSKVTW 479 **************************************************************99....79999******************** PP EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 vehv+++++++h+++++lv+sgla+gak+wv tl+rqce+ LOC_Os08g08820.2 480 VEHVEVDDSSVHNIYKPLVNSGLAFGAKRWVGTLDRQCER 519 **************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 89 | 162 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.43E-20 | 94 | 164 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.07 | 104 | 164 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-20 | 105 | 168 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.35E-19 | 106 | 165 | No hit | No description |
Pfam | PF00046 | 6.4E-18 | 107 | 162 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 139 | 162 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 39.771 | 290 | 522 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.92E-35 | 291 | 521 | No hit | No description |
CDD | cd08875 | 4.63E-122 | 294 | 518 | No hit | No description |
SMART | SM00234 | 9.9E-61 | 299 | 519 | IPR002913 | START domain |
Pfam | PF01852 | 8.8E-54 | 300 | 519 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 7.4E-7 | 365 | 518 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 4.03E-24 | 541 | 774 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009913 | Biological Process | epidermal cell differentiation | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009037 | anatomy | lemma | ||||
PO:0001047 | developmental stage | lemma development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 785 aa Download sequence Send to blast |
MTPARRMPPV IGRNGVAYES PSAQLPLTQA DMLDSHHLQQ ALQQQYFDQI PVTTTAAADS 60 GDNMLHGRAD AGGLVDEFES KSCSENVDGA GDGLSGDDQD PNQRPRKKRY HRHTQHQIQE 120 MEAFFKECPH PDDKQRKELS RELGLEPLQV KFWFQNKRTQ MKNQHERHEN AQLRAENDKL 180 RAENMRYKEA LSSASCPNCG GPAALGEMSF DEHHLRVENA RLRDEIDRIS GIAAKHVGKP 240 PIVSFPVLSS PLAVAAARSP LDLAGAYGVV TPGLDMFGGA GDLLRGVHPL DADKPMIVEL 300 AVAAMDELVQ MAQLDEPLWS SSSEPAAALL DEEEYARMFP RGLGPKQYGL KSEASRHGAV 360 VIMTHSNLVE ILMDVNQFAT VFSSIVSRAS THEVLSTGVA GNYNGALQVM SMEFQVPSPL 420 VPTRESYFVR YCKNNSDGTW AVVDVSLDSL RPSPVQKCRR RPSGCLIQEM PNGYSKVTWV 480 EHVEVDDSSV HNIYKPLVNS GLAFGAKRWV GTLDRQCERL ASAMASNIPN GDLGVITSVE 540 GRKSMLKLAE RMVASFCGGV TASVAHQWTT LSGSGAEDVR VMTRKSVDDP GRPPGIVLNA 600 ATSFWLPVPP AAVFDFLRDE TSRSEWDILS NGGAVQEMAH IANGRDHGNS VSLLRVNSAN 660 SNQSNMLILQ ESCTDASGSY VVYAPVDIVA MNVVLNGGDP DYVALLPSGF AILPDGPSGN 720 AQAAVGENGS GSGGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIACTV ERIKAAVCRD 780 SNPQ* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.11988 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 37990119 | 0.0 | ||||
Expression Atlas | Q6ZAR0 | - |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Specifically expressed in the L1-layer of the meristem and protoderm (epidermis) of leaf primordia. During leaf development, expressed in protoderm from plastochron 1 (P1) to P4 and down-regulated at P5 to then disappear. Expressed in the epidermis of primary rachis branch, and in the protoderm of secondary rachis branch primordia. Expressed similarly in L1-layer or protoderm in young and developed floral shoots. During embryogenesis, expressed in the outermost (epidermal) cells 2 days after pollination (DAP) and later at 4 DAP in protodermal cells without any organ differentiation. In nearly mature embryo, strongly expressed in protoderm in the shoot apical meristem (SAM) and lateral organ primordia. {ECO:0000269|PubMed:11846882}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os08g08820.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os08g08820 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB077993 | 0.0 | AB077993.1 Oryza sativa mRNA for Roc1, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650023.1 | 0.0 | homeobox-leucine zipper protein ROC1 isoform X2 | ||||
Swissprot | Q6ZAR0 | 0.0 | ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1 | ||||
TrEMBL | I1QG77 | 0.0 | I1QG77_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA08G0042800.1 | 0.0 | (Oryza glaberrima) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G04890.1 | 0.0 | protodermal factor 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os08g08820.2 |
Entrez Gene | 4344832 |
Publications ? help Back to Top | |||
---|---|---|---|
|