PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g08160.1
Common NameOs08g0179400, OsJ_26257
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 468aa    MW: 48101.2 Da    PI: 7.5658
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g08160.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000543603882154
                       HHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  21 eeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         L++l+ +      +K + a++L +++eYIk L
  LOC_Os08g08160.1 360 TALQQLVSPF-----GKTDTASVLHETIEYIKFL 388
                       5566666665.....89***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.194339388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-10350408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.09E-4351392No hitNo description
Gene3DG3DSA:4.10.280.101.1E-7351410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MYGGGAAAGG ATTTTGSHGG GGGDWWSAAV SSCSAPAPET MQGFGGWSAA VVAVDGGGNT  60
SRSAAGNTAS SESPGSLATG SSITFQEPAG GVADPAAIAV HAQTVAGGGG GGWNQQPFLD  120
GSGFHGYMSS SRNDHHTNHH HHQINTPSLM SNSSSNNGVM LQEHQHDQNY QFLSNLGFEL  180
LSSPTSPYGG GGGFRSSLLR SLTEPAAAAK PNDSPGFQQY HHHQPAMNLQ PPAAAAGREP  240
LQFTNSTAAP FWNPSSRFTV AAEGTALGGA GASPAQPTPA SLAAKRALEG VGDSSSIITK  300
KAKADSTPLK KSRTGTPSPL PTTFKACVYI YIIFNLSQMV IDFLPIKFHV RKEKLGDRVT  360
ALQQLVSPFG KTDTASVLHE TIEYIKFLHD QVGALSAPYL KNRQQVPHLK NSTGVDNDGG  420
GGGGEATAAS KRDLTGRGLC LVPISSTFAV ASETPVDFWT PFGAAFR*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA3BQ81
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g08160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g08160
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045900.0AP004590.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0577G06.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648821.10.0transcription factor bHLH112 isoform X2
TrEMBLA3BQ810.0A3BQ81_ORYSJ; Os08g0179400 protein
STRINGORUFI08G05340.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Representative plantOGRP1296544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.12e-38bHLH family protein