PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g07970.2 | ||||||||
Common Name | OJ1120_C08.7, Os08g0176900, OSNPB_080176900, P0583B06.15 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 412aa MW: 45224 Da PI: 7.2453 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.4 | 2.3e-11 | 128 | 164 | 2 | 38 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeL 38 +++k +rr+++NReAAr+sR+RKka+i++Le+ +L LOC_Os08g07970.2 128 PRDKIQRRLAQNREAARKSRLRKKAYIQNLETSRMKL 164 57999*************************9854444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.0E-4 | 127 | 184 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.5E-8 | 129 | 164 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.531 | 129 | 171 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.88E-7 | 131 | 177 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 6.3E-8 | 132 | 177 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 134 | 149 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 2.8E-27 | 216 | 290 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MELYPGYLED HFNIHKLSAP RYMTSAAPAA AQFAAPAPAA MGIYDRRHHP LAAGVWGDHP 60 FIRPDTTAST SNAAAAAMVV APPPLTEPKF ESQLALPLQH GDDQDNAAAL QESPRHASDS 120 FEQEASKPRD KIQRRLAQNR EAARKSRLRK KAYIQNLETS RMKLAHLEQE ITRARQQSAY 180 INRSSNPATL PAPIDSGVVT FEVEYAQWVE EQGRQTAELR ASLQAAAEGP ELRAVVEAAL 240 AHYDRLFAAK REAARRDVFF VMSGVWRTGA ERFFLWIAGF RPSEVIRVLA PQLEPMTERQ 300 AADVQGLQQK ARHLEDALSQ GMDKLKQTLA DSLLAEAVVV STSCDASPPP PPPEEEEPSS 360 SAAGDGGCYM AQMGSAMGRL SNLVAFVDHV RHRRSPPPTS HLHVRRRAEL G* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.20077 | 0.0 | leaf| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32992237 | 0.0 | ||||
Expression Atlas | Q6ZBS8 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g07970.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g07970 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107028 | 0.0 | AK107028.1 Oryza sativa Japonica Group cDNA clone:002-121-A09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650459.1 | 0.0 | transcription factor TGAL10-like isoform X2 | ||||
Refseq | XP_025883354.1 | 0.0 | transcription factor TGAL10-like isoform X1 | ||||
Swissprot | Q6ZBS8 | 0.0 | TGL10_ORYSJ; Transcription factor TGAL10 | ||||
TrEMBL | B8BB80 | 0.0 | B8BB80_ORYSI; Uncharacterized protein | ||||
STRING | OS08T0176900-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10030.2 | 7e-90 | TGACG motif-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g07970.2 |
Publications ? help Back to Top | |||
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