PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g07970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 418aa MW: 45610.5 Da PI: 6.8641 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.4 | 2.4e-11 | 106 | 142 | 2 | 38 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeL 38 +++k +rr+++NReAAr+sR+RKka+i++Le+ +L LOC_Os08g07970.1 106 PRDKIQRRLAQNREAARKSRLRKKAYIQNLETSRMKL 142 57999*************************9854444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.0E-4 | 105 | 162 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.531 | 107 | 149 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.5E-8 | 107 | 142 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.88E-7 | 109 | 155 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 6.4E-8 | 110 | 155 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 112 | 127 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 2.8E-27 | 194 | 268 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MTSAAPAAAQ FAAPAPAAMG IYDRRHHPLA AGVWGDHPFI RPDTTASTSN AAAAAMVVAP 60 PPLTEPKFES QLALPLQHGD DQDNAAALQE SPRHASDSFE QEASKPRDKI QRRLAQNREA 120 ARKSRLRKKA YIQNLETSRM KLAHLEQEIT RARQQSAYIN RSSNPATLPA PIDSGVVTFE 180 VEYAQWVEEQ GRQTAELRAS LQAAAEGPEL RAVVEAALAH YDRLFAAKRE AARRDVFFVM 240 SGVWRTGAER FFLWIAGFRP SEVIRVLAPQ LEPMTERQAA DVQGLQQKAR HLEDALSQGM 300 DKLKQTLADS LLAEAVVVST SCDASPPPPP PEEEEPSSSA AGDGGCYMAQ MGSAMGRLSN 360 LVAFVDHADH LRQETLQNMY KILTLPQAAR GLLALGDYCQ RLRALSSLWA ARPREPA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.20077 | 0.0 | leaf| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32992237 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g07970.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g07970 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT831514 | 0.0 | CT831514.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129B22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025883355.1 | 0.0 | transcription factor TGAL10-like isoform X3 | ||||
Refseq | XP_025883356.1 | 0.0 | transcription factor TGAL10-like isoform X3 | ||||
Swissprot | Q6ZBS8 | 0.0 | TGL10_ORYSJ; Transcription factor TGAL10 | ||||
TrEMBL | B8BB80 | 0.0 | B8BB80_ORYSI; Uncharacterized protein | ||||
STRING | OS08T0176900-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3571 | 38 | 77 | Representative plant | OGRP2679 | 11 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10030.2 | 1e-117 | TGACG motif-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g07970.1 |
Publications ? help Back to Top | |||
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