PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g07700.1 | ||||||||
Common Name | LOC9270670, Os08g0173700, OSJNBa0054L03.18, OSNPB_080173700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 176aa MW: 19447.5 Da PI: 5.5007 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53 | 8.6e-17 | 36 | 85 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y GVr+++ +gr++AeIr p++ + r++lg+f+taeeAa a++ + ++ g LOC_Os08g07700.1 36 EYLGVRRRP-WGRYAAEIRNPYT---KERHWLGTFDTAEEAAVAYDLSAISISG 85 588******.**********865...5*******************99988766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.09E-18 | 35 | 93 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.36E-20 | 35 | 77 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-25 | 36 | 93 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.442 | 36 | 94 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.6E-26 | 36 | 100 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-9 | 37 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-9 | 37 | 48 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-9 | 59 | 75 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020048 | anatomy | microspore | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MADAAEQHHR QEETAAATTT PQQMMMRRRR ARASSEYLGV RRRPWGRYAA EIRNPYTKER 60 HWLGTFDTAE EAAVAYDLSA ISISGAAAAR TNFLYPDMHH HHPSPPQHAL SPAVPPPPPP 120 PPPSPLYDDD YLSPAAAEEE VEAGDDESLT IATILQSFQY QQSVPPASSG SMFYY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-16 | 35 | 93 | 13 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116011127 | 0.0 | ||||
Expression Atlas | Q6Z4V0 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g07700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g07700 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241762 | 0.0 | AK241762.1 Oryza sativa Japonica Group cDNA, clone: J065205D04, full insert sequence. | |||
GenBank | AP005164 | 0.0 | AP005164.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0054L03. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649703.1 | 1e-124 | ethylene-responsive transcription factor LEP | ||||
Swissprot | Q3E703 | 1e-29 | ERF88_ARATH; Ethylene-responsive transcription factor ERF088 | ||||
TrEMBL | A0A0E0I7Q6 | 1e-123 | A0A0E0I7Q6_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0QEY9 | 1e-123 | A0A0E0QEY9_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q6Z4V0 | 1e-123 | Q6Z4V0_ORYSJ; Os08g0173700 protein | ||||
STRING | ORUFI08G04980.1 | 1e-124 | (Oryza rufipogon) | ||||
STRING | OS08T0173700-01 | 1e-124 | (Oryza sativa) | ||||
STRING | ONIVA08G04340.1 | 1e-124 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1885 | 33 | 97 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 2e-25 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g07700.1 |
Entrez Gene | 9270670 |