PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g06659.1 | ||||||||
Common Name | LOC4344741, Os08g0163800, OSNPB_080163800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | LBD | ||||||||
Protein Properties | Length: 197aa MW: 21283.4 Da PI: 4.3719 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 90 | 3e-28 | 16 | 120 | 1 | 100 |
DUF260 1 aCaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer.....edamsslvyeAearardPvyGavgvilklqqql 87 aCaaC++++ +C+++C+ p pa++pk+f++++ +FG++++l + +a ++ r + m+++vy A+ar++dP+ Ga+g ilklqqql LOC_Os08g06659.1 16 ACAACAHHGAsSCPPNCAPPPP-PADKPKRFWYARLMFGMERILGFSEAEKQGIRpngstVISMAAVVYLADARVEDPILGAYGRILKLQQQL 107 7********989**********.*************************976555666666899****************************** PP DUF260 88 eqlkaelallkee 100 ++lkae a+++++ LOC_Os08g06659.1 108 DRLKAERARQHHP 120 ********99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 10.033 | 15 | 121 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-18 | 16 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009066 | anatomy | anther | ||||
PO:0001004 | developmental stage | anther development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MAEPPPSPTT TTTQQACAAC AHHGASSCPP NCAPPPPPAD KPKRFWYARL MFGMERILGF 60 SEAEKQGIRP NGSTVISMAA VVYLADARVE DPILGAYGRI LKLQQQLDRL KAERARQHHP 120 ATSSPAPADD VALQPEPFHQ PPAQPSTPPA LAIPDEEEEE DNDDDEDEDE EEGQEDGEGH 180 APADDDVPCA KRRKHN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.31625 | 0.0 | panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115474942 | 0.0 | ||||
Expression Atlas | Q0J7T3 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g06659.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g06659 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005605 | 0.0 | AP005605.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1449_C01. | |||
GenBank | AP005847 | 0.0 | AP005847.4 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ9990_A01. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649522.1 | 1e-141 | LOB domain-containing protein 1 | ||||
TrEMBL | Q0J7T3 | 1e-140 | Q0J7T3_ORYSJ; Os08g0163800 protein | ||||
STRING | OS08T0163800-01 | 1e-141 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16910 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 9e-06 | LOB domain-containing protein 4 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g06659.1 |
Entrez Gene | 4344741 |