PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g06280.2 | ||||||||
Common Name | LOC4344713, LSD1, Os08g0159500, OsJ_26122 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | LSD | ||||||||
Protein Properties | Length: 185aa MW: 19140.2 Da PI: 7.8316 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 43.6 | 4.8e-14 | 68 | 92 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP+GA+sV+Ca+C tV LOC_Os08g06280.2 68 CSGCRNLLMYPAGATSVCCAVCSTV 92 ***********************99 PP | |||||||
2 | zf-LSD1 | 46.3 | 6.9e-15 | 107 | 131 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV LOC_Os08g06280.2 107 CGGCHTLLMYIRGATSVQCSCCHTV 131 ************************9 PP | |||||||
3 | zf-LSD1 | 41.4 | 2.4e-13 | 145 | 169 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V LOC_Os08g06280.2 145 CGNCRMLLMYQYGARSVKCAVCNFV 169 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.5E-13 | 65 | 95 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 4.4E-5 | 68 | 166 | IPR011031 | Multihaem cytochrome |
Pfam | PF06943 | 2.6E-11 | 68 | 92 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.3E-14 | 104 | 133 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.9E-12 | 107 | 131 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.0E-11 | 142 | 170 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.5E-12 | 145 | 169 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals | ||||
GO:0005634 | Cellular Component | nucleus |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MHLSAGFLSC RERKGDFSCL TAARICEAST SDAVVQAAGT AMPVPLAPYP TPPVPFTPPN 60 GAQSQLVCSG CRNLLMYPAG ATSVCCAVCS TVTAVPAPGT EMAQLVCGGC HTLLMYIRGA 120 TSVQCSCCHT VNLAMEANQV AHVNCGNCRM LLMYQYGARS VKCAVCNFVT SFQASPGTDQ 180 KPSS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.68741 | 1e-100 | flower| leaf| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297721664 | 1e-100 | ||||
Expression Atlas | Q0J7V9 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g06280.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g06280 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111759 | 0.0 | AK111759.1 Oryza sativa Japonica Group cDNA clone:J023055E16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648106.1 | 1e-124 | protein LSD1 isoform X3 | ||||
Refseq | XP_015648107.1 | 1e-124 | protein LSD1 isoform X3 | ||||
Swissprot | Q0J7V9 | 1e-131 | LSD1_ORYSJ; Protein LSD1 | ||||
TrEMBL | A0A0D3GWJ9 | 1e-129 | A0A0D3GWJ9_9ORYZ; Uncharacterized protein | ||||
STRING | OBART08G03580.1 | 1e-130 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 3e-59 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g06280.2 |
Entrez Gene | 4344713 |
Publications ? help Back to Top | |||
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