PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g06140.1
Common NameLOC4344705, Os08g0157900, OsJ_26109, OSNPB_080157900, P0498E12.103
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 731aa    MW: 80654.8 Da    PI: 4.3979
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g06140.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.62.1e-5291421128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       lp GfrFhPtdeelv +yLk k++g+  ++++vi+e+d++k+ePwdLp k  +++++ ew+fF+++d+ky++g+r+nrat++gyWkatgkd+ 
  LOC_Os08g06140.1   9 LPLGFRFHPTDEELVRHYLKGKITGQIRSEADVIPEIDVCKCEPWDLPdKsLIRSDDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDRV 101
                       699************************9999****************96446677888*********************************** PP

               NAM  92 vlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       + sk    k++++g+kktLvf++grapkge+t W+mheyr 
  LOC_Os08g06140.1 102 IRSKgdkkKQQVIGMKKTLVFHRGRAPKGERTGWIMHEYRT 142
                       ***988777777***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-593163IPR003441NAC domain
PROSITE profilePS5100557.5329163IPR003441NAC domain
PfamPF023651.4E-2710141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009030anatomycarpel
PO:0007130developmental stagesporophyte reproductive stage
PO:0007606developmental stagegynoecium development stage
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MTVMELKKLP LGFRFHPTDE ELVRHYLKGK ITGQIRSEAD VIPEIDVCKC EPWDLPDKSL  60
IRSDDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR VIRSKGDKKK QQVIGMKKTL  120
VFHRGRAPKG ERTGWIMHEY RTTEPEFESG EQGGYVLYRL FRKQEEKIER PSPDEVDRSG  180
YSPTPSRSTP DNMEPIEDGN TPLNRESPES ALHESPIDLP ALTEAQAAPI TRWLADRTDN  240
ATTNEVNISH MPHHGLDGGA KQASPSAGAF PQLIGSQQNI HDNNELATVS APMLPHEDFN  300
NFPLGAIGNF DGNMNPRDPV EEFLNQTIAD PDEHSSTTSK AQYDSDTGII PTEFENHGVM  360
QGEFMDDLSG LENLDFWPDD RNPQLSALYE DTPLLPYDST DQDVLSMDSG AESLQDLFNS  420
MDDSNARNNV WGNEPFLQGT GFPMSWPLQP NSAFPNQGTA NRRLMLQLSE SLSPDFDVSM  480
TRDECEDEEP GIVVTSKYVN EAPEESTAEK DMPSDGDDAE PTGITILRRR HAPTASSFSD  540
GDDAESTGIT ILRQHQAPNA SLLSDGDDAE STGITILRRR QAPTASSASS FTQQGAAVQR  600
VRLQSNLDAA PCSSVDGSSS CIINEGESER TMEKPEIEEN AGSTLAEGGT CHEDDQKEHD  660
ASAANAKSVL RLRKTAEGSD KENKQEEEEG VLASHVRAPG NKRGFPSYII WLVLSVALVL  720
LISLGIYGWV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-45916420169NAC domain-containing protein 19
3swm_B4e-45916420169NAC domain-containing protein 19
3swm_C4e-45916420169NAC domain-containing protein 19
3swm_D4e-45916420169NAC domain-containing protein 19
3swp_A4e-45916420169NAC domain-containing protein 19
3swp_B4e-45916420169NAC domain-containing protein 19
3swp_C4e-45916420169NAC domain-containing protein 19
3swp_D4e-45916420169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.87870.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166331640.0
Expression AtlasQ7EZD3-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g06140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g06140
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8469940.0EU846994.1 Oryza sativa Japonica Group clone KCS281G09 NAC2 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650288.10.0NAC domain-containing protein 14 isoform X1
TrEMBLA0A0E0QEK50.0A0A0E0QEK5_ORYRU; Uncharacterized protein
TrEMBLQ7EZD30.0Q7EZD3_ORYSJ; NAC2 protein
STRINGORUFI08G03870.10.0(Oryza rufipogon)
STRINGOS08T0157900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859
Representative plantOGRP1297045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.12e-69NAC 014