PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g05510.1 | ||||||||
Common Name | LOC4344664, Os08g0151000, OSNPB_080151000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 340aa MW: 35983.9 Da PI: 10.3857 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.7 | 3.1e-14 | 107 | 151 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ I++ + ++Rt+ q+ s+ qky LOC_Os08g05510.1 107 PWTEEEHRTFLAGLEKLGKGDWRGISKNFVTTRTPTQVASHAQKY 151 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.431 | 100 | 156 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.08E-17 | 101 | 156 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.1E-18 | 103 | 155 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.5E-11 | 104 | 154 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-12 | 107 | 150 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.59E-10 | 107 | 152 | No hit | No description |
Pfam | PF00249 | 4.8E-12 | 107 | 151 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001015 | developmental stage | K second mitotic division stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MPQDSRPAAM RLFGVTISPP PPPPEPEPEP DPSDPRDPSP RPAREDAMRK CKSMGNLAAA 60 AAASSAAAGG GGAGDAGGSG DGYLSDGGLL LSSGKRRRAQ ERKKAVPWTE EEHRTFLAGL 120 EKLGKGDWRG ISKNFVTTRT PTQVASHAQK YFLRQTNPNK KKRRSSLFDM MATDMSPAPN 180 CPVLPPSMGK LHDMVAMTKQ LQNSSLEGVS SSSTVNLAPQ VARDLPPPIP SFKATNVDSS 240 LSKMNHMDGF LRAPMLFRPI PRIAEGASSS TPATASIADL EFQANLTACS NALFASPRRK 300 PKKADPPAEK DLDLTVAPPS QQTRASISSQ NAVGVIQVV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 159 | 163 | KKKRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.26109 | 0.0 | callus| flower| leaf| panicle| root| vegetative meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297607974 | 0.0 | ||||
Expression Atlas | A0A0P0XBW5 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g05510.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g05510 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242017 | 0.0 | AK242017.1 Oryza sativa Japonica Group cDNA, clone: J075110L24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648291.1 | 0.0 | transcription factor MYBS3-like isoform X1 | ||||
TrEMBL | A0A0P0XBW5 | 0.0 | A0A0P0XBW5_ORYSJ; Os08g0151000 protein | ||||
STRING | OS08T0151000-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5858 | 36 | 52 | Representative plant | OGRP12973 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 3e-37 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g05510.1 |
Entrez Gene | 4344664 |