PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g04170.1 | ||||||||
Common Name | LOC4344611, OJ1613_G04.4-1, Os08g0135800, P0680F05.43-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C3H | ||||||||
Protein Properties | Length: 959aa MW: 105584 Da PI: 8.8041 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.5 | 8.3e-07 | 319 | 339 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f + G C++G++C++ H+ LOC_Os08g04170.1 319 PCHDFVK-GRCSRGANCRYVHD 339 8******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.018 | 230 | 255 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.267 | 234 | 256 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-4 | 234 | 254 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0021 | 314 | 340 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.126 | 314 | 341 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-4 | 317 | 340 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-4 | 319 | 339 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.817 | 373 | 400 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.67E-7 | 374 | 398 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.1E-5 | 374 | 399 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-4 | 377 | 399 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001059 | developmental stage | J bicellular pollen stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 959 aa Download sequence Send to blast |
MTGETRKERS KWDTKGPPDI VEISEDESLP MNMDDHKKGN DDHRKGSDLL PSQDFGHGND 60 KQIGESLNLK STVSMHHGSA GHEQDRADGL NKDIKERSSK ASSERLPLRM GDEDHNKNDW 120 HNRGFEKAAG NQGMSRYADD RRRGDGWGTT LSRGYSSRIS SSGPDAWKRS RSPLSPRGGW 180 NRSRRNRSRS RSRSRSIGRG RGRSRSRSRS PYFSDRGSEW RVERSRSSGG PALPCRDFVA 240 GRCRRGSNCR FPHEDGVRRQ FDEHYPVDSR EKYGHQNRDF MDPREQDDYL RNRPPRGGHY 300 DEGTWERSEP RREYRSTMPC HDFVKGRCSR GANCRYVHDD STPHGGWRDE VRDNAIGRSG 360 PDSSYGNRTE HRRTNKNPCK FFANGGCRRG QNCPYLHEEA SQSQMGLGAP DEPGYTGGPT 420 TRGDYLSWSE QNNSVQASSH VLSRDDRENP VPQGTGRNDS RYENKNRHSK DAGSSQYQIF 480 PQDDFGSVGQ NKPEIAASQL PQFIPSVQTG TESINIDKVS DMGGQSGPGT VGNLSMQIGM 540 HSANLLGGHN LGQKAESQDA ISQISAAPSL PGATQLQNTT SSVPLNSQVQ QSDFSLHPNR 600 QDQFAVPHAT TNNSAPSMQS QPVAPYMGHS QHGYIMGAQS LPDLSVHNGQ IFNVGQVPQN 660 LPTIVHAGQN QATSDTPNLG RDSGDQGLQN THNFQPVAPN EQTQSQTLQG LSVVASSSSV 720 DMAGAPLSHN AVSSQEEVRR VTASLAQYFV PSLTADTSGL QSSQPDPNSS LMNNSSAAPQ 780 AVQPNHWPWL QQAGMVQPSH IVPPEQPAPQ TFQAPMAAGS SNGNPLLLPH SVAPTVPAAA 840 LATNETTPAE NKKEEPKDTD AEANEDGENK KSKDSKALKM FKLALADFVK DALKPTWKEG 900 QMSREVHKTI VKKVVDKVTT TVENTPQTKE KIDIYMSYSR EKLNKLVQAY VGKYAKKD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 198 | 208 | RGRGRSRSRSR |
2 | 200 | 208 | RGRSRSRSR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.32689 | 0.0 | callus| flower| leaf| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32985664 | 0.0 | ||||
Expression Atlas | Q6YYC0 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g04170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g04170 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100455 | 0.0 | AK100455.1 Oryza sativa Japonica Group cDNA clone:J023091E18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650360.1 | 0.0 | zinc finger CCCH domain-containing protein 55 | ||||
Refseq | XP_025883327.1 | 0.0 | zinc finger CCCH domain-containing protein 55 | ||||
Swissprot | Q6YYC0 | 0.0 | C3H55_ORYSJ; Zinc finger CCCH domain-containing protein 55 | ||||
TrEMBL | A0A0E0I728 | 0.0 | A0A0E0I728_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2YR00 | 0.0 | A2YR00_ORYSI; Uncharacterized protein | ||||
STRING | OS08T0135800-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7766 | 34 | 43 | Representative plant | OGRP12036 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 3e-09 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g04170.1 |
Entrez Gene | 4344611 |
Publications ? help Back to Top | |||
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