PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g02070.1 | ||||||||
Common Name | LOC4344493, MADS26, Os08g0112700, P0498H04.24 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 223aa MW: 25217.2 Da PI: 7.4485 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.4 | 8.9e-24 | 10 | 56 | 2 | 48 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 rien rqvtf+kRr+g+lKKA ELS+LC+a++ +iifs +gkly+ LOC_Os08g02070.1 10 RIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYD 56 8********************************************97 PP | |||||||
2 | K-box | 49.5 | 1.8e-17 | 80 | 171 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLe.sLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ + +qe+ Lk+ei+ Lq+ +R + G+ + ++++eL+ Le+ Le + +iRs K+++++++i+ l+ ke +l+ +n+ L++k+ LOC_Os08g02070.1 80 ACGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNRANeHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGMLKAANEILQEKIV 171 4445556679**********************998626****************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.917 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.0E-33 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-26 | 1 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.45E-38 | 2 | 79 | No hit | No description |
PRINTS | PR00404 | 1.4E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-22 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.201 | 85 | 176 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.0E-21 | 86 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MARGKVQLRR IENPVHRQVT FCKRRAGLLK KARELSILCE ADIGIIIFSA HGKLYDLATT 60 GTMEELIERY KSASGEQANA CGDQRMDPKQ EAMVLKQEIN LLQKGLRYIY GNRANEHMTV 120 EELNALERYL EIWMYNIRSA KMQIMIQEIQ ALKSKEGMLK AANEILQEKI VEQNGLIDVG 180 MMVADQQNGH FSTVPLLEEI TNPLTILSGY STCRGSEMGY SF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-15 | 1 | 70 | 1 | 69 | MEF2C |
5f28_B | 4e-15 | 1 | 70 | 1 | 69 | MEF2C |
5f28_C | 4e-15 | 1 | 70 | 1 | 69 | MEF2C |
5f28_D | 4e-15 | 1 | 70 | 1 | 69 | MEF2C |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.4174 | 0.0 | flower| panicle| root| stem| vegetative meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32979146 | 0.0 | ||||
Expression Atlas | Q0J8G8 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves and spikelets (rice flower). {ECO:0000269|Ref.7}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g02070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g02070 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB003326 | 0.0 | AB003326.1 Oryza sativa Japonica Group mRNA for MADS box-like protein, complete cds, clone:R3786. | |||
GenBank | AK069122 | 0.0 | AK069122.1 Oryza sativa Japonica Group cDNA clone:J023004P21, full insert sequence. | |||
GenBank | AY551925 | 0.0 | AY551925.1 Oryza sativa (japonica cultivar-group) MADS-box protein RMADS220 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650791.1 | 1e-164 | MADS-box transcription factor 26 | ||||
Swissprot | A2YQK9 | 1e-165 | MAD26_ORYSI; MADS-box transcription factor 26 | ||||
Swissprot | Q0J8G8 | 1e-165 | MAD26_ORYSJ; MADS-box transcription factor 26 | ||||
TrEMBL | I1QF31 | 1e-163 | I1QF31_ORYGL; Uncharacterized protein | ||||
STRING | OS08T0112700-01 | 1e-164 | (Oryza sativa) | ||||
STRING | ORGLA08G0003200.1 | 1e-164 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1491 | 36 | 112 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 9e-63 | AGAMOUS-like 12 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g02070.1 |
Entrez Gene | 4344493 |
Publications ? help Back to Top | |||
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