PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g01700.1
Common NameLOC9271209, Os08g0108500, OSNPB_080108500
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 307aa    MW: 32559.3 Da    PI: 6.8848
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g01700.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.6e-09172212954
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        r RR+ri +++  L++l+P       +K++ a++L +A++YIk L
  LOC_Os08g01700.1 172 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYIKFL 212
                       699*****************87.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.459163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-15168224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-15169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-13169222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-7173212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.77E-6186217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDNMTHNSSS SSSWDLDMSL GSHHHPLLFD QPPPPPPPPP PPPLPFHLHH HPLDPSPSSS  60
LFPPPPHHHH HAHHLHHPLD LDQRRGHHDY GGGDQGGDEE LRLQQEAAAG GGGGGQDGGG  120
GGDQDADEEL GAMKEMMYRI AAMQPVDIDP ATIKKPRRRN VRISDDPQSV AARHRRERIS  180
ERIRILQRLV PGGTKMDTAS MLDEAIRYIK FLKRQVQELQ HQPGPPPPPY PAGAAPAAGP  240
STSAVGPPGR PFLPLGGGGP MIDWVGLTRP VDIHGPTSSS SSSSMGGALG FGFGCGGGGQ  300
SSHGMH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.730470.0leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977259840.0
Expression AtlasC7J662-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g01700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g01700
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0044620.0AP004462.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0450B04.
GenBankAP0045840.0AP004584.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0007D08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649611.10.0transcription factor HEC2
TrEMBLA0A0E0QDF10.0A0A0E0QDF1_ORYRU; Uncharacterized protein
TrEMBLC7J6620.0C7J662_ORYSJ; Os08g0108500 protein
STRINGORUFI08G00650.10.0(Oryza rufipogon)
STRINGOS08T0108500-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90513246
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.12e-37bHLH family protein