PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g49530.1
Common NameLOC4344404, Os07g0695900, OSNPB_070695900, P0627E10.29
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 385aa    MW: 41776.8 Da    PI: 6.9709
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g49530.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding353.4e-11329378147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                       r++W++  ++ l+++v+++G+g+Wk I    +   + R+  ++k++++++
  LOC_Os07g49530.1 329 RKKWSEKQEKTLLEGVEKYGKGNWKDIKMAYPdvfEDRSTVDLKDKFRNL 378
                       789*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.141324383IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-11325378IPR009057Homeodomain-like
SuperFamilySSF466891.57E-13327379IPR009057Homeodomain-like
SMARTSM007171.2E-7328381IPR001005SANT/Myb domain
PfamPF002491.3E-9329378IPR001005SANT/Myb domain
CDDcd116603.48E-21330380No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MTPADAFLIL DFLAGNRLIP HSVFTTLLAS LPSVSPHTSP RLRAGLALRA LDSALSISES  60
SEMDAPTLLR KARAVLADPD LAPFFPQHLA APASADDAPA AAVAHLNRLL DVEWASLPPS  120
SLEIAAERIV GSQALHSWAN ADHAQRSKLR LLVGESTALE ILDTLQRPDA STNHPGTLPQ  180
VDNAPETNGA SHCAQQNDGA KSGLVKQNAE ADRPQQDSTR HQQDSVQGAS NSQLKESSVT  240
MESIRGTGPD ITGFMEEATP RVAGQFAPDN IKNHQVTGSK RSLMERNPTA STYEWDGSDS  300
EGKRPAAKRR LPIFERTAKP SPTAAHKTRK KWSEKQEKTL LEGVEKYGKG NWKDIKMAYP  360
DVFEDRSTVD LKDKFRNLER HLCA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.891860.0panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329819630.0
Expression AtlasQ6Z3X4-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g49530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g49530
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0719400.0AK071940.1 Oryza sativa Japonica Group cDNA clone:J013077N22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646481.10.0uncharacterized protein LOC4344404
TrEMBLQ6Z3X40.0Q6Z3X4_ORYSJ; Os07g0695900 protein
STRINGOS07T0695900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139982224
Representative plantOGRP1278533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.11e-11TRF-like 5