PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g48820.2 | ||||||||
Common Name | LOC4344349, OJ1150_E04.124, OJ1165_F02.101, Os07g0687700, OsJ_25648, OSNPB_070687700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 335aa MW: 37215 Da PI: 7.7619 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.9 | 2.8e-10 | 50 | 89 | 5 | 44 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 k rr+++NReAAr+sR+RKka++++Le +L + ++ LOC_Os07g48820.2 50 KTIRRLAQNREAARKSRLRKKAYVQQLESSKLKLAQLEQE 89 789*************************855444444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 8.0E-8 | 46 | 109 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.37 | 48 | 92 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.81E-7 | 50 | 93 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.9E-8 | 50 | 95 | No hit | No description |
Pfam | PF00170 | 2.1E-7 | 50 | 91 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 53 | 68 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.0E-33 | 132 | 207 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MADASSRTDT SIVVDNDDKN HQLENGHSGA VMASNSSDRS DRSDKLMDQK TIRRLAQNRE 60 AARKSRLRKK AYVQQLESSK LKLAQLEQEL QKARQQGIFI SSSGDQTHAM SGNGALTFDL 120 EYTRWLEEQN KQINELRTAV NAHASDSDLR LIVDGIMAHY DEVFKVKGVA AKADVFHILS 180 GMWKTPAERC FLWLGGFRPS ELLKLLANHL EPLTEQQLLG LNNLQESSQQ AEDALSQGME 240 ALQQSLADTL AGSLGSSGSS GNVANYMGQM AMAMGKLGTL ENFLCQADNL RQQTLHQMQR 300 ILTIRQASRA LLAIHDYFSR LRALSSLWLA RPRE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.10220 | 0.0 | callus| flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 17025919 | 0.0 | ||||
Expression Atlas | Q7X993 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a negative role in rice basal defense responses to the bacterial blight pathogen Xanthomomas oryzae pv. oryzae (Xoo). May function in both positive and negative regulation of rice defense genes. Binds DNA in vitro (PubMed:16045470). Acts as transcriptional activator when bound to NPR1/NH1 in vitro (PubMed:22353606). Binds to the promoter sequence of CRK10 in vitro (PubMed:27176732). {ECO:0000269|PubMed:16045470, ECO:0000269|PubMed:22353606, ECO:0000269|PubMed:27176732}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g48820.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g48820 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB051295 | 0.0 | AB051295.1 Oryza sativa OsNIF2 mRNA for bZIP transcription factor, complete cds. | |||
GenBank | AK100440 | 0.0 | AK100440.1 Oryza sativa Japonica Group cDNA clone:J023089F16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647505.1 | 0.0 | transcription factor TGA2.1 | ||||
Refseq | XP_015647506.1 | 0.0 | transcription factor TGA2.1 | ||||
Swissprot | Q7X993 | 0.0 | TGA21_ORYSJ; Transcription factor TGA2.1 | ||||
TrEMBL | I1QDE1 | 0.0 | I1QDE1_ORYGL; Uncharacterized protein | ||||
STRING | OS07T0687700-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12250.2 | 1e-134 | TGACG motif-binding factor 6 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g48820.2 |
Entrez Gene | 4344349 |
Publications ? help Back to Top | |||
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