PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g48820.1
Common NameLOC4344349, OJ1150_E04.124, OJ1165_F02.101, Os07g0687700, OsJ_25648, OSNPB_070687700
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 335aa    MW: 37215 Da    PI: 7.7619
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g48820.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.92.8e-105089544
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44
                      k  rr+++NReAAr+sR+RKka++++Le    +L +  ++
  LOC_Os07g48820.1 50 KTIRRLAQNREAARKSRLRKKAYVQQLESSKLKLAQLEQE 89
                      789*************************855444444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.0E-846109IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.374892IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.81E-75093No hitNo description
Gene3DG3DSA:1.20.5.1702.9E-85095No hitNo description
PfamPF001702.1E-75091IPR004827Basic-leucine zipper domain
PROSITE patternPS0003605368IPR004827Basic-leucine zipper domain
PfamPF141441.0E-33132207IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MADASSRTDT SIVVDNDDKN HQLENGHSGA VMASNSSDRS DRSDKLMDQK TIRRLAQNRE  60
AARKSRLRKK AYVQQLESSK LKLAQLEQEL QKARQQGIFI SSSGDQTHAM SGNGALTFDL  120
EYTRWLEEQN KQINELRTAV NAHASDSDLR LIVDGIMAHY DEVFKVKGVA AKADVFHILS  180
GMWKTPAERC FLWLGGFRPS ELLKLLANHL EPLTEQQLLG LNNLQESSQQ AEDALSQGME  240
ALQQSLADTL AGSLGSSGSS GNVANYMGQM AMAMGKLGTL ENFLCQADNL RQQTLHQMQR  300
ILTIRQASRA LLAIHDYFSR LRALSSLWLA RPRE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.102200.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO170259190.0
Expression AtlasQ7X993-
Functional Description ? help Back to Top
Source Description
UniProtPlays a negative role in rice basal defense responses to the bacterial blight pathogen Xanthomomas oryzae pv. oryzae (Xoo). May function in both positive and negative regulation of rice defense genes. Binds DNA in vitro (PubMed:16045470). Acts as transcriptional activator when bound to NPR1/NH1 in vitro (PubMed:22353606). Binds to the promoter sequence of CRK10 in vitro (PubMed:27176732). {ECO:0000269|PubMed:16045470, ECO:0000269|PubMed:22353606, ECO:0000269|PubMed:27176732}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g48820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g48820
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0512950.0AB051295.1 Oryza sativa OsNIF2 mRNA for bZIP transcription factor, complete cds.
GenBankAK1004400.0AK100440.1 Oryza sativa Japonica Group cDNA clone:J023089F16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647505.10.0transcription factor TGA2.1
RefseqXP_015647506.10.0transcription factor TGA2.1
SwissprotQ7X9930.0TGA21_ORYSJ; Transcription factor TGA2.1
TrEMBLI1QDE10.0I1QDE1_ORYGL; Uncharacterized protein
STRINGOS07T0687700-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Representative plantOGRP7221667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-134TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Chern M, et al.
    A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation.
    Plant Methods, 2012. 8(1): p. 6
    [PMID:22353606]
  4. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]
  5. Chern M, et al.
    A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity.
    PLoS Genet., 2016. 12(5): p. e1006049
    [PMID:27176732]