PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g48630.2 | ||||||||
Common Name | LOC4344331, OJ1200_C08.104, Os07g0685700, OsEIL2, OsJ_25629, OSNPB_070685700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | EIL | ||||||||
Protein Properties | Length: 594aa MW: 65146.9 Da PI: 5.2134 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 501.6 | 3.9e-153 | 81 | 469 | 1 | 354 |
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaa....tgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasd 89 eel++rmw+d++++krlke ++++ +++++a g +++++s+eqarrkkmsraQDgiLkYMlk+mevcnaqGfvYgiipekgkpv+gasd LOC_Os07g48630.2 81 EELERRMWRDRVRHKRLKELQQSRAGRESRAgdagGGGRQQRQSQEQARRKKMSRAQDGILKYMLKMMEVCNAQGFVYGIIPEKGKPVSGASD 173 8**********************99999988888888899***************************************************** PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHH CS EIN3 90 sLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwg 182 +Lr+WWkekv+fdrngpaai+kyqa+n++++ + + ++ + +hsl+elqDTtlgSLLsalmqhcdppqrrfplekgv+pPWWP+G+e+ww+ LOC_Os07g48630.2 174 NLRSWWKEKVRFDRNGPAAIAKYQADNAVPGCDGDAGGAAPAGPHSLHELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPEGSEAWWP 266 *********************************999888****************************************************** PP HHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XXXXXXXXXX CS EIN3 183 elglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ssslrkqspk 273 e+g++k+ g+ppykkphdlkkawkv+vLtavikhmsp+++++r+l+rqsk+lqdkm+ake ++l+vl+qee+++ ++++ ++ ++ + LOC_Os07g48630.2 267 EAGVPKELGPPPYKKPHDLKKAWKVAVLTAVIKHMSPDVDKVRRLVRQSKCLQDKMTAKEIVTWLAVLKQEEDLYLKLHPGalPPP--LSAAS 357 ********************************************************************************965444..47889 PP XXXXXXXXXXXXXXXXXX.XXXXXXXXXX................................XXXXXXXXXXXXXXXXXXXXX......XXXXX CS EIN3 274 vtlsceqkedvegkkeskikhvqavktta................................gfpvvrkrkkkpsesakvsskevsrtcqssqf 334 +++s + ++dveg + + + + +k+++ ++++++kr +p+ + s+ ++tc + q+ LOC_Os07g48630.2 358 FNASVSGEYDVEGVDGDEAGNNNLQKAQNdatafmdltttmdaalsnnkflimplmkeeaiDVDFIQKRS-EPELMLSSDSHARVYTCGNVQC 449 9***********5555554555555555556899***********************************9.55555555666678******** PP XX.XXXXXXXXXXXXXXXXX CS EIN3 335 rgsetelifadknsisqney 354 ++s+++l+f d+n+++ ++y LOC_Os07g48630.2 450 PHSNYALGFLDRNERNAHQY 469 ******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04873 | 6.8E-129 | 81 | 338 | No hit | No description |
Gene3D | G3DSA:1.10.3180.10 | 1.2E-70 | 217 | 346 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
SuperFamily | SSF116768 | 3.27E-58 | 218 | 341 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020104 | anatomy | leaf sheath |
Sequence ? help Back to Top |
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Protein Sequence Length: 594 aa Download sequence Send to blast |
MMGAAVTMVD RRMAFAAEAD VDSKAAFGFF GGECFVGEGD LVNPAPPPPQ QQQVHEGGFA 60 AEDESDGDDD DDDDDDVDDI EELERRMWRD RVRHKRLKEL QQSRAGRESR AGDAGGGGRQ 120 QRQSQEQARR KKMSRAQDGI LKYMLKMMEV CNAQGFVYGI IPEKGKPVSG ASDNLRSWWK 180 EKVRFDRNGP AAIAKYQADN AVPGCDGDAG GAAPAGPHSL HELQDTTLGS LLSALMQHCD 240 PPQRRFPLEK GVPPPWWPEG SEAWWPEAGV PKELGPPPYK KPHDLKKAWK VAVLTAVIKH 300 MSPDVDKVRR LVRQSKCLQD KMTAKEIVTW LAVLKQEEDL YLKLHPGALP PPLSAASFNA 360 SVSGEYDVEG VDGDEAGNNN LQKAQNDATA FMDLTTTMDA ALSNNKFLIM PLMKEEAIDV 420 DFIQKRSEPE LMLSSDSHAR VYTCGNVQCP HSNYALGFLD RNERNAHQYA CKHNAAAAAA 480 ESKPPPPHIF EPLGSFDFDL PVDGQRCLAG LMTMYDNDVA AATQMHHHHH QQQQANFFIR 540 DDAPFGGDVA ATAAAAPEFR FSSNFNVTGG GAVDYGGAMQ QPPAKYAGSN WFY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4zds_A | 4e-70 | 215 | 346 | 1 | 132 | Protein ETHYLENE INSENSITIVE 3 |
4zds_B | 4e-70 | 215 | 346 | 1 | 132 | Protein ETHYLENE INSENSITIVE 3 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.10423 | 0.0 | callus| flower| leaf| panicle| root| seed| stem| vegetative meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115474158 | 0.0 | ||||
Expression Atlas | Q8W3L9 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots (PubMed:19798512). Expressed at low levels in panicles (PubMed:19798512). Expressed in roots, leaf blades, leaf sheaths, stems, anthers of young flowers, shells, and developing grains (PubMed:25995326). {ECO:0000269|PubMed:19798512, ECO:0000269|PubMed:25995326}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a positive regulator in the ethylene response pathway (PubMed:19798512, PubMed:25995326). Involved in wound signaling by binding specifically to the DNA sequence 5'-ATGTACCT-3' found in the promoter of some wound-inducible genes (PubMed:19798512). Required for ethylene-promoted coleoptile elongation (PubMed:25995326). Acts as negative regulator of salt tolerance (PubMed:25995326). During salt stress, activates the cation transporter HKT1, which mediates increased sodium uptake in roots, and contributes to sodium accumulation and salt toxicity (PubMed:25995326). Possesses transactivation activity in protoplasts (PubMed:25995326). {ECO:0000269|PubMed:19798512, ECO:0000269|PubMed:25995326}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g48630.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and metyhl jasmonate. {ECO:0000269|PubMed:19798512}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g48630 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB074972 | 0.0 | AB074972.2 Oryza sativa Japonica Group OsEIL2 mRNA for ethylene-insensitive-3-like protein, complete cds. | |||
GenBank | AP003818 | 0.0 | AP003818.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1200_C08. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646574.1 | 0.0 | ETHYLENE INSENSITIVE 3-like 1 protein | ||||
Swissprot | Q8W3L9 | 0.0 | EIL2_ORYSJ; Protein ETHYLENE-INSENSITIVE 3-like 2 | ||||
TrEMBL | A0A0E0QCX4 | 0.0 | A0A0E0QCX4_ORYRU; Uncharacterized protein | ||||
STRING | OS07T0685700-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27050.1 | 1e-137 | ETHYLENE-INSENSITIVE3-like 1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g48630.2 |
Entrez Gene | 4344331 |
Publications ? help Back to Top | |||
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