PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g48596.1 | ||||||||
Common Name | LOC4344327, Os07g0685300, OsJ_25625, OSNPB_070685300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | G2-like | ||||||||
Protein Properties | Length: 346aa MW: 38253.5 Da PI: 7.2252 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108 | 4.9e-34 | 52 | 106 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt+eLHerFveav+qLGG++kAtPkti++lm+++gLtl+h+kSHLQkYRl LOC_Os07g48596.1 52 KPRLKWTSELHERFVEAVNQLGGPDKATPKTIMRLMGIPGLTLYHLKSHLQKYRL 106 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.694 | 49 | 109 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-32 | 50 | 107 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.06E-17 | 51 | 107 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-24 | 52 | 107 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.6E-10 | 54 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.3E-25 | 154 | 200 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009047 | anatomy | stem | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MTGTEQMMYH QQQVQSDSQH LSSRPGLPPE KQFLLQGGAD SSSGLVLSTD AKPRLKWTSE 60 LHERFVEAVN QLGGPDKATP KTIMRLMGIP GLTLYHLKSH LQKYRLSKNL QSQANASRAQ 120 GVLGCSTTEI DKPCEGNGSP ASHLDLETQT NSSMHINEAL QMQIEVQRRL HEQLEVQRHL 180 QLRIEAQGKY LQSVLEKAQE ALGTIAVAET AATANASSSK RLQNEHTQLH HHQQQQQVGD 240 GSVDSCLTAC DCEGSHHSRS HGHRGEQDIL SIGLPPFEPA AARSGKEHHY LLFPNEPSRR 300 RSCSDERRRE MSTLQASELD LSINGRSSSH SHRRENIDLN GAGWS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 7e-19 | 52 | 108 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-19 | 52 | 108 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-19 | 52 | 108 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-19 | 52 | 108 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.52524 | 0.0 | leaf| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32977663 | 0.0 | ||||
Expression Atlas | Q0D3I5 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:12008900}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g48596.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g48596 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK067645 | 0.0 | AK067645.1 Oryza sativa Japonica Group cDNA clone:J013112H14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646570.1 | 0.0 | myb-related protein 1 isoform X2 | ||||
Swissprot | Q9FK47 | 1e-79 | PHLA_ARATH; Myb-related protein 1 | ||||
TrEMBL | I1QDC0 | 0.0 | I1QDC0_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q0D3I5 | 0.0 | Q0D3I5_ORYSJ; Os07g0685300 protein | ||||
STRING | OS07T0685300-01 | 0.0 | (Oryza sativa) | ||||
STRING | ORGLA07G0211200.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3574 | 38 | 79 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 6e-78 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g48596.1 |
Entrez Gene | 4344327 |
Publications ? help Back to Top | |||
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