PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g48570.1 | ||||||||
Common Name | LOC4344326, Os07g0685000, OsJ_25624, OSJNBa0060O17.33, OSNPB_070685000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | Dof | ||||||||
Protein Properties | Length: 477aa MW: 50817.3 Da PI: 5.4725 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.5 | 6.9e-39 | 104 | 163 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rn+PvG+grrk+k+s LOC_Os07g48570.1 104 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKSCQRYWTAGGSMRNLPVGAGRRKSKSS 163 7899*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-31 | 101 | 161 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.1E-31 | 106 | 162 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.528 | 108 | 162 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 110 | 146 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MDDLAAASPP HPPPPPPESH VPPPPQTPEK DSCEDTGDMR ISEEKPCTDQ ELDADQMNSS 60 SFNSSSECEN QTPSNDEMTG SESKSEAAQT EGGGSSEEKV LKKPDKILPC PRCNSMDTKF 120 CYYNNYNINQ PRHFCKSCQR YWTAGGSMRN LPVGAGRRKS KSSTANYRSI LITGSNLAAP 180 AGDAPLYQLS IKGDQTATAV KFAPDSPLCN SMASVLKIGE QSKNAKPTST AQPRNGETQT 240 CPASGTTSDS PRNEPVNGAV SGHQNGIVGH SGVPPMHPIP CFPGPPFVYP WSPAWNGIPA 300 MAPPVCTAPA EPANSSDNGS TASVQWSMPP VMPVPGYFPV IPSSVWPFIS PWPNGAWSSP 360 WIQPNCSVSA SSPTSTSTCS DNGSPVLGKH SRDSKPQGDD KAEKNLWIPK TLRIDDPDEA 420 AKSSIWTTLG IEPGDRSMFR SFQSKPESRE QISGAARVLQ ANPAALSRSQ SFQETT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.10235 | 0.0 | callus| flower| leaf| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32975834 | 0.0 | ||||
Expression Atlas | Q84PD2 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00046 | PBM | Transfer from AT5G39660 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g48570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g48570 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK104095 | 0.0 | AK104095.1 Oryza sativa Japonica Group cDNA clone:001-032-E07, full insert sequence. | |||
GenBank | AY224430 | 0.0 | AY224430.1 Oryza sativa (japonica cultivar-group) isolate 20587 AOBP-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647890.1 | 0.0 | cyclic dof factor 2 | ||||
TrEMBL | Q84PD2 | 0.0 | Q84PD2_ORYSJ; AOBP-like protein | ||||
STRING | OS07T0685000-02 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1434 | 38 | 116 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 1e-81 | cycling DOF factor 2 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g48570.1 |
Entrez Gene | 4344326 |
Publications ? help Back to Top | |||
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