PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g48260.1 | ||||||||
Common Name | LOC4344296, OJ1205_F02.22, Os07g0680400, OSJNBa0008J01.9, OSNPB_070680400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 334aa MW: 34837.5 Da PI: 6.5945 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 74.9 | 1e-23 | 122 | 183 | 2 | 59 |
--SS-EEEEEEE--TT-S.S-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgse.fprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg +WrKYGqK++++s+ +prsYYrCt++ gC+++k+v++s+++ + ++i Y geH+++ LOC_Os07g48260.1 122 EDGRQWRKYGQKHIQDSPnNPRSYYRCTHRpdqGCMATKQVQTSESNSSEFVISYYGEHTCS 183 89**************9736*********9999***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.0E-25 | 107 | 185 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.71E-23 | 114 | 185 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.461 | 116 | 185 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-34 | 121 | 184 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.3E-23 | 122 | 182 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MASPDGGVGD GGAEPHEVMD DLLEMREQAA MLHSMLHGTS PSSCAAAAST RQLNQLIDGV 60 MSRLQSSSLS VMSPGGGGGR RGSGGRKKKG AKAVAGPHRR SSSGRRRSKS PFVRMVTTKE 120 LEDGRQWRKY GQKHIQDSPN NPRSYYRCTH RPDQGCMATK QVQTSESNSS EFVISYYGEH 180 TCSDPSTIPF VVEAEAPAAD YANLISFGSS GGASTSRVDP LRQSRHRLMA EAVDPTPSCS 240 FANCHSPVLS SECASEAAAL SSSLPLSAVV GSAVTTPSTS IVGSAPADYD WPSGLAGGDM 300 AGSFPSSPSS LGFMTGSFGN LPGDDDDMFG FDP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-19 | 116 | 182 | 3 | 68 | OsWRKY45 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.11321 | 0.0 | leaf| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32996109 | 0.0 | ||||
Expression Atlas | Q7XHX5 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g48260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g48260 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK110900 | 0.0 | AK110900.1 Oryza sativa Japonica Group cDNA clone:002-173-B01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646872.1 | 0.0 | probable WRKY transcription factor 70 | ||||
Refseq | XP_015646873.1 | 0.0 | probable WRKY transcription factor 70 | ||||
TrEMBL | Q7XHX5 | 0.0 | Q7XHX5_ORYSJ; Os07g0680400 protein | ||||
STRING | OS07T0680400-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12527 | 28 | 37 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 1e-19 | WRKY DNA-binding protein 46 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g48260.1 |
Entrez Gene | 4344296 |