PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g47790.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 215aa MW: 23512.4 Da PI: 6.7903 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5.2e-19 | 68 | 118 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+G+r+++ +g+W+AeIrdp + +r++lg+f tae Aa+a+++a+++++g+ LOC_Os07g47790.2 68 LYRGIRRRP-WGKWAAEIRDPAK---GARVWLGTFATAEAAARAYDRAARRIRGA 118 69*******.**********843...4*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.10E-15 | 67 | 126 | No hit | No description |
PROSITE profile | PS51032 | 24.421 | 68 | 125 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.5E-13 | 68 | 117 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-22 | 68 | 126 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.5E-37 | 68 | 131 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 69 | 80 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-31 | 69 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 91 | 107 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MCGGAIISDF IPQREAHRAA TGSKRALCAS DFWPSASQEA ADFDHLTAPC TFTPDQEEPT 60 KKRERKTLYR GIRRRPWGKW AAEIRDPAKG ARVWLGTFAT AEAAARAYDR AARRIRGAKA 120 KVNFPNEDPP LDDPAADGHS HGGAAIPCRE FMDYDAVMAG FFHQPYVVAD GVPAVPAEEA 180 PTVAYVHHHL PPQPQQDAGL ELWSFDNIHT AVPM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 69 | 125 | 6 | 63 | ATERF1 |
3gcc_A | 2e-22 | 69 | 125 | 6 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 61 | 75 | KRERKTLYRGIRRRP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.8920 | 0.0 | callus| flower| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 31745666 | 0.0 | ||||
Expression Atlas | Q7Y047 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in stems and leaves, and, to a lower extent, in roots, siliques and flowers. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9192694}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g47790.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g47790 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY297447 | 0.0 | AY297447.1 Oryza sativa (japonica cultivar-group) AP2 domain transcription factor EREBP mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644689.1 | 1e-140 | ethylene-responsive transcription factor RAP2-3 | ||||
Swissprot | O22259 | 9e-37 | ERF71_ARATH; Ethylene-responsive transcription factor ERF071 | ||||
Swissprot | P42736 | 3e-36 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | Q7Y047 | 1e-141 | Q7Y047_ORYSJ; AP2 domain transcription factor EREBP | ||||
STRING | OGLUM07G26170.1 | 1e-140 | (Oryza glumipatula) | ||||
STRING | ONIVA07G25780.1 | 1e-140 | (Oryza nivara) | ||||
STRING | OBART07G26160.1 | 1e-140 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 1e-25 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g47790.2 |