PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g47790.1
Common NameLOC4344266, Os07g0674800, P0037D09.18, P0618H09.16
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 217aa    MW: 23654.5 Da    PI: 6.7903
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g47790.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.3e-1970120256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        y+G+r+++ +g+W+AeIrdp +    +r++lg+f tae Aa+a+++a+++++g+
  LOC_Os07g47790.1  70 LYRGIRRRP-WGKWAAEIRDPAK---GARVWLGTFATAEAAARAYDRAARRIRGA 120
                       69*******.**********843...4*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.26E-1569128No hitNo description
SMARTSM003803.5E-3770133IPR001471AP2/ERF domain
PROSITE profilePS5103224.42170127IPR001471AP2/ERF domain
PfamPF008478.6E-1370119IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2270128IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-3171128IPR001471AP2/ERF domain
PRINTSPR003672.5E-117182IPR001471AP2/ERF domain
PRINTSPR003672.5E-1193109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MCGGAIISDF IPQREAHRAA TGSKRALCAS DFWPSASQEA ADFDHLTAPC TFTPDQAAEE  60
PTKKRERKTL YRGIRRRPWG KWAAEIRDPA KGARVWLGTF ATAEAAARAY DRAARRIRGA  120
KAKVNFPNED PPLDDPAADG HSHGGAAIPC REFMDYDAVM AGFFHQPYVV ADGVPAVPAE  180
EAPTVAYVHH HLPPQPQQDA GLELWSFDNI HTAVPM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2271127663ATERF1
3gcc_A2e-2271127663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16377KRERKTLYRGIRRRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.89200.0callus| flower| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO317456660.0
Expression AtlasQ6ZDW4-
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g47790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g47790
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2974470.0AY297447.1 Oryza sativa (japonica cultivar-group) AP2 domain transcription factor EREBP mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644689.11e-158ethylene-responsive transcription factor RAP2-3
SwissprotO222596e-39ERF71_ARATH; Ethylene-responsive transcription factor ERF071
TrEMBLA0A0D3GUW91e-157A0A0D3GUW9_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0AP821e-157A0A0E0AP82_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0I5L41e-157A0A0E0I5L4_ORYNI; Uncharacterized protein
TrEMBLA2YPV81e-157A2YPV8_ORYSI; Uncharacterized protein
TrEMBLQ6ZDW41e-157Q6ZDW4_ORYSJ; AP2 domain transcription factor EREBP
STRINGOGLUM07G26170.11e-158(Oryza glumipatula)
STRINGONIVA07G25780.11e-158(Oryza nivara)
STRINGOBART07G26160.11e-158(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115852836
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.16e-28ERF family protein
Publications ? help Back to Top
  1. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  2. Yao Y,Chen X,Wu AM
    ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
    Plant Signal Behav, 2017. 12(6): p. e1329073
    [PMID:28537474]
  3. Eysholdt-Derzsó E,Sauter M
    Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling.
    Plant Physiol., 2017. 175(1): p. 412-423
    [PMID:28698356]
  4. Eysholdt-Derzsó E,Sauter M
    Hypoxia and the group VII ethylene response transcription factor HRE2 promote adventitious root elongation in Arabidopsis.
    Plant Biol (Stuttg), 2019. 21 Suppl 1: p. 103-108
    [PMID:29996004]