PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g47330.1 | ||||||||
Common Name | fzp, LOC4344233, Os07g0669500, OSNPB_070669500, P0625E02.126 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 319aa MW: 33540.8 Da PI: 7.0289 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.4 | 7.5e-18 | 58 | 106 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdp++ + r++lg+f+ta+eAa a+++a+++++g LOC_Os07g47330.1 58 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 106 56******.**********965...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.547 | 57 | 114 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.64E-25 | 57 | 113 | No hit | No description |
SMART | SM00380 | 1.4E-29 | 57 | 120 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 58 | 69 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-28 | 58 | 114 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.9E-20 | 58 | 115 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.8E-11 | 60 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 80 | 96 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010102 | Biological Process | lateral root morphogenesis | ||||
GO:0010432 | Biological Process | bract development | ||||
GO:0010451 | Biological Process | floral meristem growth | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MNTRGSGSSS SSSSSQASLM AFSEPPKPAS QPSPPSSPMS ERPPSGRSRR RAQEPGRFLG 60 VRRRPWGRYA AEIRDPTTKE RHWLGTFDTA QEAALAYDRA ALSMKGAQAR TNFVYTHAAY 120 NYPPFLAPFH APQYAAAAAA PSSVQYGGGV GAAPHIGSYG HHHHHHHHHG HGAASGASSV 180 GECSTMPVMV PVDPHRSSMS SSLLDMDRNG HDFLFSGADD NSGYLSSVVP ESCLRPRGGG 240 AAADHQDMRR YSDADAYGMM GLREDVDDLA QMVAGFWGGG DAADQLGACG FPASGGAADM 300 VASSQGSDSY SPFSFLSH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-18 | 54 | 113 | 11 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.32291 | 0.0 | stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32990574 | 0.0 | ||||
Expression Atlas | Q8H3Q1 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at the time of rudimentary glumes differentiation in a half-ring domain at the base of the rudimentary glume primordium. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required to prevent the formation of axillary meristems within the spikelet meristem and permit the subsequent establishment of floral meristem identity (PubMed:12835399, PubMed:14503923). Mediates the transition from spikelet to floret meristem (PubMed:14503923). Determines the transition from panicle branching to spikelet formation. May specify floral organ identity by regulating the class B genes (Agamous-like genes) MADS6 and MADS17, as well as class E genes MADS1, MADS7 and MADS8 in floral meristem (PubMed:26744119). Possesses transactivation activity (PubMed:12835399). {ECO:0000269|PubMed:12835399, ECO:0000269|PubMed:14503923, ECO:0000269|PubMed:26744119}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00520 | DAP | Transfer from AT5G18560 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g47330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g47330 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB103120 | 0.0 | AB103120.1 Oryza sativa Japonica Group fzp gene for frizzy panicle, complete cds. | |||
GenBank | AK105365 | 0.0 | AK105365.1 Oryza sativa Japonica Group cDNA clone:001-119-F02, full insert sequence. | |||
GenBank | AP004570 | 0.0 | AP004570.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0625E02. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 0.0 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646388.1 | 0.0 | ethylene-responsive transcription factor FZP | ||||
Swissprot | Q8H3Q1 | 0.0 | FZP_ORYSJ; Ethylene-responsive transcription factor FZP | ||||
TrEMBL | A0A0E0I5G5 | 0.0 | A0A0E0I5G5_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0QCI9 | 0.0 | A0A0E0QCI9_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI07G26720.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS07T0669500-01 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA07G25390.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10525 | 28 | 38 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18560.1 | 1e-37 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g47330.1 |
Entrez Gene | 4344233 |