PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os07g45450.1

Common Name

P0427D10.118

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 326aa MW: 35469.6 Da PI: 4.1788

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os07g45450.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.6	3.4e-07	249	273	1	25
FAR1 1 kfYneYAkevGFsvrkskskkskrn 25 +fYn YA++vGFs++k+++++s+++ LOC_Os07g45450.1 249 DFYNGYAYMVGFSTCKASNYHSRKT 273 6*********************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.4E-5	249	274	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MLFRLSQEGG ITYTKLIQQV SVSSNAILPG AQVAGGLPLL QNSCGSFMQL LQAPIESETA 60 LYLTSNRFEY DNTFWGFDPH NGYQQNDLQN AQTDTSQICN SLPQSVDVHP PVASLDMLYD 120 EMQKSSADVD NQAEMCRSTV QLKASSVEVI YNEMQTQNIE ADACFDQHFE QATEEDLLSD 180 HAIVTFQQVE EIEQDKSAEN PNQNFSEEDI NIFLENESVT AVQRGGQEAN SAHVPSINKV 240 FADENEAFDF YNGYAYMVGF STCKASNYHS RKTVDGDTAA GSTSEHGAAT RHSAAAGRVG 300 SAAAAASKEA ATPGTGKRGE REGRW*

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	Q8H4B1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os07g45450.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os07g45450

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004272	0.0	AP004272.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0427D10.
GenBank	AP014963	0.0	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642362.1	1e-128	protein FAR1-RELATED SEQUENCE 7-like
TrEMBL	Q8H4B1	0.0	Q8H4B1_ORYSJ; Uncharacterized protein P0427D10.118

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22001	3	5

Link Out ? help Back to Top
Phytozome	LOC_Os07g45450.1