PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g44690.1
Common NameHSF12, HSF19, HSFB4B, LOC4344063, OJ1340_C08.141-1, OJ1340_C08.141-2, Os07g0640900, P0524G08.108-1, P0524G08.108-2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HSF
Protein Properties Length: 311aa    MW: 34450.8 Da    PI: 7.0637
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g44690.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.92.1e-35351272103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d+ +++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg k+ll
  LOC_Os07g44690.1  35 FLTKTYQLVDDPCTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGAKHLL 118
                       9****************************************************************999.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                        +i+r+ks+
  LOC_Os07g44690.1 119 AEIHRRKSS 127
                       ******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.1E-5831124IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-3332124IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.2E-3732124IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-193558IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.6E-3135124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-197385IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407498IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-198698IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAFLVERCGE MVVSMEMGPH GGGGAAAGKP VPAPFLTKTY QLVDDPCTDH IVSWGEDDTT  60
FVVWRPPEFA RDLLPNYFKH NNFSSFVRQL NTYGFRKIVA DRWEFANEFF RKGAKHLLAE  120
IHRRKSSQPP PPPMPHQPYH HHHHLNPFSL PPPPPAYHHH HLIQEEPATT AHCTVAGDGG  180
EGGDFLAALS EDNRQLRRRN SLLLSELAHM KKLYNDIIYF LQNHVAPVTT TTTTPSSTAM  240
AAAQHHLPAA ASCRLMELDS PDHSPPPPPP KTPATDGGDT VKLFGVSLHG RKKRAHRDDD  300
DGVHDQGSEV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-222212417129Heat shock factor protein 1
5d5v_B1e-222212417129Heat shock factor protein 1
5d5v_D1e-222212417129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.506430.0callus| flower| panicle| root| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329739700.0
Expression AtlasQ7XHZ0-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g44690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Interaction ? help Back to Top
Source Intact With
IntActSearch Q7XHZ0
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g44690
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0639520.0AK063952.1 Oryza sativa Japonica Group cDNA clone:001-123-F07, full insert sequence.
GenBankAY3444940.0AY344494.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645691.10.0heat stress transcription factor B-4b
SwissprotQ7XHZ00.0HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBLA0A0P0X9G90.0A0A0P0X9G9_ORYSJ; Os07g0640900 protein (Fragment)
STRINGOS07T0640900-020.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-69heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Baniwal SK, et al.
    Heat stress response in plants: a complex game with chaperones and more than twenty heat stress transcription factors.
    J. Biosci., 2004. 29(4): p. 471-87
    [PMID:15625403]
  3. Liu JG, et al.
    Isolation and characterization of a cDNA encoding two novel heat-shock factor OsHSF6 and OsHSF12 in Oryza sativa L.
    J. Biochem. Mol. Biol., 2005. 38(5): p. 602-8
    [PMID:16202242]
  4. Guo J, et al.
    Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis.
    J Genet Genomics, 2008. 35(2): p. 105-18
    [PMID:18407058]
  5. Mittal D, et al.
    Binding affinities and interactions among different heat shock element types and heat shock factors in rice (Oryza sativa L.).
    FEBS J., 2011. 278(17): p. 3076-85
    [PMID:21729241]