PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g44090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 197aa MW: 21236.7 Da PI: 12.7587 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34 | 6.6e-11 | 14 | 50 | 1 | 37 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37 rg W++eEde+l + ++++G g+W+++++ g R + LOC_Os07g44090.1 14 RGLWSPEEDEKLMNHIAKYGHGCWSSVPKLAGGLRLR 50 788*****************************43444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.146 | 9 | 59 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-13 | 10 | 54 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.93E-9 | 10 | 54 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.9E-9 | 14 | 54 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.17E-7 | 17 | 54 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MAKRAGGARK KLRRGLWSPE EDEKLMNHIA KYGHGCWSSV PKLAGGLRLR LSCRVGRTTR 60 SRTSGTLTSR RSFASAASIR PPTSRSPRSS PPPPAPARRR CSATPSSSCP PSAPSRRRRA 120 MMAAGTARSA APRVSAATGR CRRCPGTAKR QRSSRWTAPA RARCCTAAAA APPPPVVAPR 180 RRPRRRLSRR CRAPAR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 97 | 118 | RRRCSATPSSSCPPSAPSRRRR |
2 | 179 | 186 | RRRPRRRL |
3 | 180 | 185 | RRPRRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.14525 | 0.0 | leaf| panicle| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g44090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g44090 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT836172 | 0.0 | CT836172.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN040M10, full insert sequence. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G57560.1 | 6e-14 | myb domain protein 50 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g44090.1 |