PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g43530.2
Common NameLOC4343984, Os07g0628500, OsJ_25221, OSNPB_070628500, P0011H09.105, P0506F02.119
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 266aa    MW: 29686.3 Da    PI: 7.3047
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g43530.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.82.5e-053676145
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHH CS
               HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLe 45
                      +r  ++erE+  Rd+ N+ f+eL  ll ++     + + Ka +L 
  LOC_Os07g43530.2 36 KRIHKSEREKLKRDKQNDLFNELGNLLEPD----RQNNGKACVLG 76
                      68899**********************996....34455555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-1132104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-832104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.1533585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MVPRDRVNAA AAGGGGEGRL VQSGIVNKKC DKKAPKRIHK SEREKLKRDK QNDLFNELGN  60
LLEPDRQNNG KACVLGETTR ILKDLLSQVE SLRKENSSLK NESHYVALER NELHDDNSML  120
RTEILELQNE LRTRMEGNPV WSHVNTRPAL RVPYPTTGVF PVQHLPHLPV TTTAAFPQQL  180
PVIIEQHYAA TPRELQLFPE SATSEDSEPS QEHGISDHVT RPQPRYPTPT ATLPVNLFPV  240
FPGRQDQQCS SGTSGTNEED RIGRS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.345490.0callus| flower| leaf| panicle| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329809860.0
Expression AtlasQ69V10-
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g43530.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g43530
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0709630.0AK070963.1 Oryza sativa Japonica Group cDNA clone:J023068N18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645391.10.0transcription factor BHLH062-like
RefseqXP_015645393.10.0transcription factor BHLH062-like
SwissprotQ69V100.0BH062_ORYSJ; Transcription factor BHLH062
TrEMBLB8B4W80.0B8B4W8_ORYSI; Uncharacterized protein
STRINGOS07T0628500-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.31e-36bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wang YJ, et al.
    A rice transcription factor OsbHLH1 is involved in cold stress response.
    Theor. Appl. Genet., 2003. 107(8): p. 1402-9
    [PMID:12920519]
  3. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  4. Wu H,Ye H,Yao R,Zhang T,Xiong L
    OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.
    Plant Sci., 2015. 232: p. 1-12
    [PMID:25617318]