PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g42510.1
Common NameB1056G08.120, LOC4343912, Os07g0617000, OsJ_25135, OSNPB_070617000, P0552F09.103
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 343aa    MW: 37167.6 Da    PI: 4.4297
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g42510.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-19110160155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ++y+G+r+++ +g+W+AeIrdp++     r++lg+fgtaeeAa a++  +++++g
  LOC_Os07g42510.1 110 TRYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFGTAEEAAMAYDVEARRIRG 160
                       68********.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.49E-30110169No hitNo description
PfamPF008472.3E-12110160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-31111169IPR001471AP2/ERF domain
SMARTSM003803.9E-35111174IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-21111169IPR016177DNA-binding domain
PROSITE profilePS5103223.749111168IPR001471AP2/ERF domain
PRINTSPR003673.5E-11112123IPR001471AP2/ERF domain
PRINTSPR003673.5E-11134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MCGGSILGDL HLPVRRTVNA GDLWGDAGKG RDGGDGLKKR KGSSWDFDVD CDDDDDDDFE  60
ADFEEFEDDY GDDDDVGFGD DDQESDMNGL KLAGFSTTKL GLGGSRKRKT RYRGIRQRPW  120
GKWAAEIRDP RKGVRVWLGT FGTAEEAAMA YDVEARRIRG KKAKVNFPDA AAAAPKRPRR  180
SSAKHSPQQQ KARSSSSSPA SLNASDAVSK SNNNRVSSAG SSTDATAAAI AIDDGVKLEL  240
LSETDPSPPM AAAAAAWLDA FELNDLDGSR CKDNAFDHQI HKVEAAVADE FAFYDDPSYM  300
QLGYQLDQGN SYENIDALFG GEAVNIGGLW SFDDMPMEFR AY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20112168663ATERF1
3gcc_A2e-20112168663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104109SRKRKT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.102930.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO428216770.0
Expression AtlasQ7X826-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g42510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g42510
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0610470.0AK061047.1 Oryza sativa Japonica Group cDNA clone:006-205-F01, full insert sequence.
GenBankAK0670600.0AK067060.1 Oryza sativa Japonica Group cDNA clone:J013090P08, full insert sequence.
GenBankAK1093600.0AK109360.2 Oryza sativa Japonica Group cDNA clone:006-206-B03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647923.10.0ethylene-responsive transcription factor 1-like
TrEMBLQ7X8260.0Q7X826_ORYSJ; EREB-like protein
STRINGOS07T0617000-020.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145602123
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-33ethylene-responsive element binding protein