PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g42400.2 | ||||||||
Common Name | LOC4343903, Os07g0615900, OSNPB_070615900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 733aa MW: 83185.9 Da PI: 8.0197 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 44.3 | 2.4e-14 | 65 | 101 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C Cg + Tp++Rrgpdg++tLCnaCG+ yrk ++ LOC_Os07g42400.2 65 CLRCGISGnaTPHMRRGPDGPRTLCNACGIAYRKGKM 101 5667777777************************876 PP | |||||||
2 | FAR1 | 84.1 | 2.2e-26 | 135 | 222 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fYn+YA +vGFsvrks+s+ks+ n ++ rtfvCs+eg+++++k+ +++++r tr+gC a+l +k + ++k++vt+++ +HnH+lap LOC_Os07g42400.2 135 EFYNKYAGHVGFSVRKSTSHKSSGN-ITKVRTFVCSREGYNRDKKSL--EAKKPRLDTRIGCPARLIIKVTPESKYRVTDFKADHNHQLAP 222 6********************9444.47889************9988..99*************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 6.5E-6 | 61 | 114 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.47E-10 | 61 | 112 | No hit | No description |
CDD | cd00202 | 9.80E-8 | 64 | 102 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.0E-11 | 64 | 103 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 1.3E-11 | 65 | 100 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF03101 | 8.9E-24 | 135 | 222 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.2E-25 | 345 | 439 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.755 | 613 | 660 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 5.1E-5 | 631 | 659 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.1E-6 | 635 | 662 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 733 aa Download sequence Send to blast |
MRVWLGRVGG GDAMMHMLVA PDGGGGGEMP PPYGGAAAAP PPPMEQELEL HRDNADDGLD 60 GHVRCLRCGI SGNATPHMRR GPDGPRTLCN ACGIAYRKGK MRRMIEAEPP IDEAALAKLV 120 PEVGMEFESE DKAYEFYNKY AGHVGFSVRK STSHKSSGNI TKVRTFVCSR EGYNRDKKSL 180 EAKKPRLDTR IGCPARLIIK VTPESKYRVT DFKADHNHQL APPSTMHMLR SQRILTELQS 240 GEAELSDDSV MTPTTKATGD LVVRQIGFLR SISLLPADYK NYLRSKRMKA MQLGDGGAIL 300 KYLQTMQMEN PAFFYTMQID EDDKLTNFFW ADPKSREDFN YFGDVLCLDT TYKINGYGRP 360 LSLFLGVNHH KQTIVFGAAM LYDESFESYR WLFESFKIAM HGKQPAVALV DQSIPLASAM 420 AAAWPNTTQR TCAWHVYQNS LKHLNHVFQG SKTFAKDFSR CVFGYEEEEE FLFAWRSMLE 480 KYDLRHNEWL SKLFDERERW ALAYERHIFC ADIISALQAE SFSSVLKKFL GPQLDLLSFF 540 KHYERAVDEH RYAELQADFQ ASQSYPRIPP AKMLKQAAHT YTPVVFEIFR KEFELFMDSV 600 LFSCGEAGAT SEYKVAPSEK PKEHFVRFDS SDCSCICTCR KFEFMGIPCC HMLKVLDYRN 660 IKELPQRYLL KRWRRTAKSA NEENQGYVAN GNGSSLNSIV PPANHHGLQG FSAMIQDTPV 720 SNMHENSFRR SS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.13876 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32976335 | 0.0 | ||||
Expression Atlas | Q0D4N7 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g42400.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g42400 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066317 | 0.0 | AK066317.1 Oryza sativa Japonica Group cDNA clone:J013064I12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647352.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X2 | ||||
TrEMBL | Q0D4N7 | 0.0 | Q0D4N7_ORYSJ; Os07g0615900 protein | ||||
STRING | ORGLA07G0170400.1 | 0.0 | (Oryza glaberrima) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-121 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g42400.2 |
Entrez Gene | 4343903 |