PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g41720.1 | ||||||||
Common Name | LOC4343866, Os07g0608200, OsHAP2G, OSNPB_070608200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NF-YA | ||||||||
Protein Properties | Length: 305aa MW: 33497.9 Da PI: 8.6371 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104.1 | 1.2e-32 | 150 | 206 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq Rakle+++kl k+rkpylheSRh+hA++R+RgsgGrF LOC_Os07g41720.1 150 EEPIFVNAKQYHAILRRRQIRAKLEAQNKL-VKGRKPYLHESRHRHAMKRARGSGGRF 206 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.5E-37 | 148 | 209 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.238 | 149 | 209 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.3E-27 | 151 | 206 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.7E-24 | 152 | 174 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 154 | 174 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.7E-24 | 183 | 206 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MLMLLRQMED HRAHTTPNYD FFSGDYQMKQ LGHKMYDQDS PSSDSGQSHQ EESAMNDSSP 60 NERHTSTQSD NDDGHQMPDQ DKTKSVSSLG NPGALPPKLN YSQSFACIPY TADAYYGGVL 120 TGYSSHAIVH PQQNGTANSR VPLPVEPAAE EPIFVNAKQY HAILRRRQIR AKLEAQNKLV 180 KGRKPYLHES RHRHAMKRAR GSGGRFLNTK QLEEQKQQQE EEAASGGASS GNRTCLQNGT 240 GSAPSASSPS EIASVSTSRE FLGNHEQSHF PSAGFLPTMS FRAQNGGDGK LVANAIHQRV 300 SMMR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 8e-23 | 150 | 211 | 2 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 190 | 199 | RHRHAMKRAR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.13736 | 0.0 | callus| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32986893 | 0.0 | ||||
Expression Atlas | Q0D4R9 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g41720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g41720 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB288033 | 0.0 | AB288033.1 Oryza sativa Japonica Group OsHAP2G mRNA for HAP2 subunit of HAP complex, complete cds. | |||
GenBank | AK101684 | 0.0 | AK101684.1 Oryza sativa Japonica Group cDNA clone:J033058N01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646559.1 | 0.0 | nuclear transcription factor Y subunit A-4 | ||||
Refseq | XP_015646560.1 | 0.0 | nuclear transcription factor Y subunit A-4 | ||||
Refseq | XP_015646561.1 | 0.0 | nuclear transcription factor Y subunit A-4 | ||||
Refseq | XP_015646562.1 | 0.0 | nuclear transcription factor Y subunit A-4 | ||||
TrEMBL | Q0D4R9 | 0.0 | Q0D4R9_ORYSJ; HAP2 subunit of HAP complex | ||||
STRING | OS07T0608200-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1373 | 38 | 121 | Representative plant | OGRP11925 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54160.1 | 2e-33 | nuclear factor Y, subunit A5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g41720.1 |
Entrez Gene | 4343866 |
Publications ? help Back to Top | |||
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