PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g40950.1
Common NameOJ1634_B10.125, OJ2013_G04.103, Os07g0600900, OSNPB_070600900
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 328aa    MW: 34545.1 Da    PI: 5.7156
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g40950.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027113135123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ C+k F ++   + H+r+H
  LOC_Os07g40950.1 113 FPCHLCNKEFGSRKAVHGHMRVH 135
                       89********************6 PP
2zf-C2H211.60.00087218240123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ Cgk +++   L  H r+H
  LOC_Os07g40950.1 218 HPCNVCGKEYPTGVALGGHKRKH 240
                       78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.44E-5110139No hitNo description
PROSITE profilePS5015711.531113140IPR007087Zinc finger, C2H2
SMARTSM003550.0067113135IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.9E-4113138IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139120.0013113137IPR007087Zinc finger, C2H2
PROSITE patternPS000280115136IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-4170175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003556.3172196IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280174196IPR007087Zinc finger, C2H2
SMARTSM003550.25218240IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974218245IPR007087Zinc finger, C2H2
PfamPF139126.1E-10218242IPR007087Zinc finger, C2H2
PROSITE patternPS000280220240IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEGKSSSRHA DPLEEVEMNS ASATEDDDGC RYVFQSRRDS DNDNDDEEGV LPATACKRRR  60
RLDDILALLP SPPTPSTSSG SEGTISDRDH GGDVIGAGDD DAAPVAARRE ASFPCHLCNK  120
EFGSRKAVHG HMRVHHAENE KEPMSLPPQV AAPVHPQARL PTRGASRSGG PYKCKYEGCI  180
MEYESHQGLG GHVAGHINRD KMATASGSGG AGKPKGKHPC NVCGKEYPTG VALGGHKRKH  240
YRKDLDLTLS LAPPGQLAAP PTPTPAPAPA AIAAVEAEAE VAEDGDGGEL VPTTPPTGAR  300
RNVVVRIWGV DLEKPVDDVE EQDSGSN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15661KRRRRL
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8GS59
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g40950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g40950
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038400.0AP003840.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1634_B10.
GenBankAP0042300.0AP004230.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ2013_G04.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882681.10.0zinc finger protein squeeze-like
TrEMBLQ8GS590.0Q8GS59_ORYSJ; Os07g0600900 protein
STRINGORUFI07G22220.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139281224
Representative plantOGRP1012237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.15e-11C2H2 family protein