PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g40080.1
Common NameLOC4343773, Os07g0590100
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 200aa    MW: 20194.6 Da    PI: 8.3974
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g40080.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000624567123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ Cgk F +   L  H  +H
  LOC_Os07g40080.1 45 FRCSLCGKAFASYQALGGHKASH 67
                      89**********99998888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.5E-124469IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.8664572IPR007087Zinc finger, C2H2
SuperFamilySSF576673.1E-84567No hitNo description
SMARTSM003550.0264567IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
SuperFamilySSF576673.1E-8107134No hitNo description
PfamPF139122.3E-7111134IPR007087Zinc finger, C2H2
SMARTSM003554.6112134IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.014112139IPR007087Zinc finger, C2H2
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MEQGGGAADG GDLISLCLMA LAAAARGEST ALALALAPPP PELHFRCSLC GKAFASYQAL  60
GGHKASHRKP SAAAAAPPAH RDVVVAAAPA SSGRVAADAD AASEADGRRR RHVCSLCRRG  120
FATGQALGGH KRFHYLHGPS VSATVSSAAT AASVGAAFDL NVAPIKEIAG EQRRCGEEAD  180
DDDEAESPSP AKKPRRRPG*
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379896260.0
Expression AtlasQ0D507-
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in abscisic acid (ABA) signaling. Required for the regulation of the cross-talk between NADPH oxidase, hydrogen peroxide and MAP kinase in ABA signaling. Regulates the expression of the NADPH oxidase genes RBOHB and RBOHE, and the MAPK genes MPK1, MPK4, MPK5, MPK7 and MPK14. Regulates ABA-induced hydrogen peroxide production and antioxidant defense. Required for tolerance to water stress and oxidative stress. {ECO:0000269|PubMed:25071223}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g40080.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and hydrogen peroxide. {ECO:0000269|PubMed:25071223}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g40080
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1113010.0AK111301.1 Oryza sativa Japonica Group cDNA clone:002-181-B04, full insert sequence.
GenBankAP0037500.0AP003750.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1174_G05.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646226.11e-137zinc finger protein 36-like
SwissprotQ75KE53e-30ZFP36_ORYSJ; Zinc finger protein 36
TrEMBLA0A0E0QAL31e-136A0A0E0QAL3_ORYRU; Uncharacterized protein
TrEMBLQ0D5071e-136Q0D507_ORYSJ; Os07g0590100 protein
STRINGORUFI07G21520.11e-137(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP148981718
Representative plantOGRP13115149
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Zhang H, et al.
    A novel rice C2H2-type zinc finger protein, ZFP36, is a key player involved in abscisic acid-induced antioxidant defence and oxidative stress tolerance in rice.
    J. Exp. Bot., 2014. 65(20): p. 5795-809
    [PMID:25071223]
  4. Li W, et al.
    A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance.
    Cell, 2017. 170(1): p. 114-126.e15
    [PMID:28666113]