PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g40020.1 | ||||||||
Common Name | LOC4343769, Os07g0589200, OsJ_24947, OSNPB_070589200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GRAS | ||||||||
Protein Properties | Length: 474aa MW: 50596.4 Da PI: 5.2589 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 297.6 | 3.2e-91 | 77 | 470 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalkl..fsevs 88 ++lL++cA+a++++d++l+q++L+ l+++a dgd++qRl+a f+ AL +r +r ++ +ka+++ ++ + ++++++a++l f +++ LOC_Os07g40020.1 77 EQLLVHCANAIEANDATLTQQILWVLNNIAPADGDSNQRLTAAFLCALVSRASR--TGACKAVTAAVADAVEsaalHVHRFTAVELasFIDLT 167 79***************************************************9..44454443333322221234666666666689***** PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfe 177 P+++f++ +aN aI+eaveg vHi+D++ ++++Q p+L++ La R+egpp lR+T+ + + s +ee+g +L +fA++ +++++ LOC_Os07g40020.1 168 PWHRFGYTAANAAIVEAVEGFPVVHIVDLSTTHCMQIPTLIDMLAGRAEGPPILRLTVADVAPSApppaLDMPYEELGAKLVNFARSRNMSMD 260 **********************************************************9886666787777789******************* PP GRAS 178 fnvl.......vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.........erdevLklvkslsPkvvvvveqeadhnsesFl 254 f+v+ +++ +++l++++L + gEal+Vn+++ lh+++de++ + s r+ +Lk ++ l P++vvvv+++ad ++++ + LOC_Os07g40020.1 261 FRVVptspadaLTSLVDQLRVQQLVSDGGEALVVNCHMLLHTVPDETAGSVSlttaqppvsLRTMLLKSLRALDPTLVVVVDEDADFTAGDVV 353 ****887666555566677777777777****************887665555445566657899**************************** PP GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347 r+ a+++ + +d++++ lp+ se+r+++E+e +g++++nv+a+eg er+er+e +W +r+++aGF++++++e+aa ++k++l+ ++ LOC_Os07g40020.1 354 GRLRAAFNFLWIPYDAVDTFLPKGSEQRRWYEAE-VGWKVENVLAQEGVERVERQEDRTRWGQRMRAAGFRAAAFGEEAAGEVKAMLNDHA-A 444 **********************************.********************************************************.8 PP GRAS 348 gyrveeesgslvlgWkdrpLvsvSaW 373 g+ ++ e++ lvl+Wk++++v++SaW LOC_Os07g40020.1 445 GWGMKREDDDLVLTWKGHNVVFASAW 470 89999********************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 46.393 | 50 | 452 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-88 | 77 | 470 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009071 | anatomy | anther wall tapetum | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 474 aa Download sequence Send to blast |
MMQFTHTAPP PPPLHPNGHG LGLGLYLDVG ATRGGGGARP WSSSSSTTTL GGSGYFPSSA 60 AASKISLGNL NSTGCMEQLL VHCANAIEAN DATLTQQILW VLNNIAPADG DSNQRLTAAF 120 LCALVSRASR TGACKAVTAA VADAVESAAL HVHRFTAVEL ASFIDLTPWH RFGYTAANAA 180 IVEAVEGFPV VHIVDLSTTH CMQIPTLIDM LAGRAEGPPI LRLTVADVAP SAPPPALDMP 240 YEELGAKLVN FARSRNMSMD FRVVPTSPAD ALTSLVDQLR VQQLVSDGGE ALVVNCHMLL 300 HTVPDETAGS VSLTTAQPPV SLRTMLLKSL RALDPTLVVV VDEDADFTAG DVVGRLRAAF 360 NFLWIPYDAV DTFLPKGSEQ RRWYEAEVGW KVENVLAQEG VERVERQEDR TRWGQRMRAA 420 GFRAAAFGEE AAGEVKAMLN DHAAGWGMKR EDDDLVLTWK GHNVVFASAW APS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 9e-49 | 77 | 473 | 88 | 475 | Protein SHORT-ROOT |
5b3h_B | 2e-49 | 77 | 473 | 34 | 421 | Protein SHORT-ROOT |
5b3h_E | 2e-49 | 77 | 473 | 34 | 421 | Protein SHORT-ROOT |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.60945 | 0.0 | callus| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297607547 | 0.0 | ||||
Expression Atlas | B9FY68 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and flowers. {ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g40020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g40020 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003750 | 0.0 | AP003750.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1174_G05. | |||
GenBank | AP005149 | 0.0 | AP005149.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645421.1 | 0.0 | scarecrow-like protein 32 | ||||
Swissprot | Q9SN22 | 1e-160 | SCL32_ARATH; Scarecrow-like protein 32 | ||||
TrEMBL | B9FY68 | 0.0 | B9FY68_ORYSJ; Os07g0589200 protein | ||||
STRING | OS07T0589200-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5697 | 37 | 59 | Representative plant | OGRP2499 | 15 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49950.1 | 1e-150 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g40020.1 |
Entrez Gene | 4343769 |