PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g40000.1 | ||||||||
Common Name | LOC4343768, Os07g0589000, OSJNBb0005G07.123, OSNPB_070589000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | LBD | ||||||||
Protein Properties | Length: 227aa MW: 23216.2 Da PI: 7.6435 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 90.5 | 2e-28 | 2 | 102 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C+++Cvl+p++ +++q +++ +v+k+FG++ ++++l+a+pe +r ++++sl+yeA r+ +Pv Gavg+++ ++++l+ LOC_Os07g40000.1 2 SCNGCRVLRKGCSEGCVLRPCLqwidgAEAQGHATVFVAKFFGRAGLMSFLTAVPEPQRAAVFQSLLYEAAGRTINPVGGAVGLLSGGSWHLC 94 6*********************9999888999************************************************************* PP DUF260 89 qlkaelal 96 q++++++l LOC_Os07g40000.1 95 QAAVDTVL 102 **999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.296 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-24 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MSCNGCRVLR KGCSEGCVLR PCLQWIDGAE AQGHATVFVA KFFGRAGLMS FLTAVPEPQR 60 AAVFQSLLYE AAGRTINPVG GAVGLLSGGS WHLCQAAVDT VLRGGGIQPL PDQVDAAAAG 120 GRDVFASTAR RAMGGCSTFS TAKRSTTTTT TKNPGTPHDA AAAAPQPEPS CDLGLWLSPG 180 SPPAPGDRRS GGRRADTPSM NSEGSVTTCG VVGDGEREPE LLNLFV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.93250 | 0.0 | callus| flower| leaf| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32979837 | 0.0 | ||||
Expression Atlas | Q7EZ26 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g40000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g40000 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK069813 | 0.0 | AK069813.1 Oryza sativa Japonica Group cDNA clone:J023030F23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647207.1 | 1e-163 | LOB domain-containing protein 37 | ||||
Swissprot | Q9FN11 | 5e-67 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | A0A0E0QAK7 | 1e-162 | A0A0E0QAK7_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q7EZ26 | 1e-162 | Q7EZ26_ORYSJ; Os07g0589000 protein | ||||
STRING | ORUFI07G21460.1 | 1e-163 | (Oryza rufipogon) | ||||
STRING | OS07T0589000-01 | 1e-163 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4084 | 36 | 75 | Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 4e-60 | LOB domain-containing protein 37 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g40000.1 |
Entrez Gene | 4343768 |
Publications ? help Back to Top | |||
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