PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g39970.1 | ||||||||
Common Name | LOC4343765, Os07g0588700, OSJNBb0005G07.120, OSNPB_070588700, ZFP39 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 227aa MW: 24483.1 Da PI: 7.2905 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 143 | 165 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C F++ L H+r+H LOC_Os07g39970.1 143 HKCSICRLEFPSGQALGGHMRVH 165 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.77E-8 | 95 | 165 | No hit | No description |
Pfam | PF13912 | 9.4E-9 | 96 | 120 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.89 | 97 | 119 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.663 | 97 | 119 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 99 | 119 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.1E-9 | 143 | 165 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.025 | 143 | 165 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.621 | 143 | 165 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 145 | 165 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MGLNEKPLVP PLSPTPVDFR AHQVFPSKHH DFDTSKSRNI SGSVAIGSDS EEEYLATSLL 60 MLAHGIRDET KDIRGMGDVK GVGVDTLELV KPSQRAYECS VCGKVYWCYQ ALGGHMTCHR 120 NLFAQVVAGD ELSSDRTMVV KGHKCSICRL EFPSGQALGG HMRVHYVGGV EGGSVKEKNV 180 VKTKVTGALK LVLKDFDLNV PVVATMVGDE AESSHSEAKA RMMTLP* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37623880 | 0.0 | ||||
Expression Atlas | Q84Z14 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g39970.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g39970 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005149 | 0.0 | AP005149.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY395294 | 0.0 | AY395294.1 Oryza sativa (japonica cultivar-group) C2H2-type zinc finger transcription factor (ZFP39) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647208.1 | 1e-168 | zinc finger protein AZF3 | ||||
TrEMBL | Q84Z14 | 1e-166 | Q84Z14_ORYSJ; C2H2-type zinc finger transcription factor | ||||
STRING | OS07T0588700-00 | 1e-167 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10028 | 23 | 35 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49930.1 | 1e-22 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g39970.1 |
Entrez Gene | 4343765 |
Publications ? help Back to Top | |||
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