PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os07g39940.1

Common Name

LOC107275987, Os07g0588400, OSNPB_070588400

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 280aa MW: 30453.1 Da PI: 6.0914

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os07g39940.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.5	1.6e-10	203	243	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq LOC_Os07g39940.1 203 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 243 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.148	193	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-14	194	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-12	198	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-11	199	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.88E-12	202	247	No hit	No description
Pfam	PF00010	7.8E-8	203	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009005	anatomy	root

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MAQFLGAHGD HCFTYEQMDE SMEAMAAMFL PGLDTDSNSS SGCLNYDVPP QCWPQHGHSS 60 SVTSFPDPAH SYGSFEFPVM DPFPIADLDA HCAIPYLTED LISPPHGNHP SARVEEATKV 120 VTPVATKRKS SAAMTASKKS KKAGKKDPIG SDEGGNTYID TQSSSSCTSE EGNLEGNAKP 180 SSKKMGTRAN RGAATDPQSL YARKRRERIN ERLRILQNLV PNGTKVDIST MLEEAVQYVK 240 FLQLQIKLLS SDDTWMYAPI AYNGVNISNI DLNISSLQK*

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	A0A0P0X817

Function -- GeneRIF ? help Back to Top
Os07g39940(LOC107275987) plays a major role in root hair formation. [PMID: 30545904]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os07g39940.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os07g39940

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003985	0.0	AP003985.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1047_C01.
GenBank	AP005149	0.0	AP005149.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07.
GenBank	AP014963	0.0	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBank	CP012615	0.0	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646227.1	0.0	transcription factor bHLH54
TrEMBL	A0A0P0X817	0.0	A0A0P0X817_ORYSJ; Os07g0588400 protein
STRING	OS07T0588400-00	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12496	29	35
Representative plant	OGRP1048	14	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27740.1	1e-38	root hair defective 6-like 4

Link Out ? help Back to Top
Phytozome	LOC_Os07g39940.1
Entrez Gene	107275987

Publications ? help Back to Top
Moon S, et al. RSL Class II Transcription Factors Guide the Nuclear Localization of RHL1 to Regulate Root Hair Development. Plant Physiol., 2019. 179(2): p. 558-568 [PMID:30545904]