PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g39470.1 | ||||||||
Common Name | CIGR2, LOC4343735, OJ1127_E01.113, Os07g0583600, OsJ_24900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GRAS | ||||||||
Protein Properties | Length: 545aa MW: 60108.2 Da PI: 6.4282 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 437.1 | 1.3e-133 | 174 | 543 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l+elL++cA+av++++ +++ ++ +l++++s +g+p++Rl ay++e+L arla+s+ ++ykal+++e + ss+ l+++++++e++P++kf LOC_Os07g39470.1 174 LKELLIACARAVEEKNSFAIDMMIPELRKIVSVSGEPLERLGAYMVEGLVARLASSGISIYKALKCKEPK---SSDLLSYMHFLYEACPYFKF 263 5799*****************************************************************9...9******************* PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 +++ aN aI eav+ge+r+HiiDf isqG+QW++LlqaLa+Rp+gpp++RiTg++++ s + le +g+rL+++A+ ++vpfef++l a LOC_Os07g39470.1 264 GYMSANGAIAEAVKGEDRIHIIDFHISQGAQWISLLQALAARPGGPPTVRITGIDDSVSAyaRGGGLELVGRRLSHIASLCKVPFEFHPL-AI 355 ********************************************************888899999************************6.77 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 + +++e +L v pgEalaVn+ l+lh+++desvs++++rd++L++vkslsPkv+++ve e+++n+++F +rf+e+l+yy+a+f+s++ +lpr LOC_Os07g39470.1 356 SGSKVEAAHLGVIPGEALAVNFTLELHHIPDESVSTANHRDRLLRMVKSLSPKVLTLVEMESNTNTAPFPQRFAETLDYYTAIFESIDLTLPR 448 89******************************************************************************************* PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 +++eri++E+++l+reivn++aceg+er er e ++kW++rl++aGF+p pls+ +++++++ll+ ++ d y++ e++g+l+lgWk+rpLv+ LOC_Os07g39470.1 449 DDRERINMEQHCLAREIVNLIACEGEERAERYEPFGKWKARLTMAGFRPSPLSSLVNATIRTLLQSYS-DNYKLAERDGALYLGWKSRPLVVS 540 ********************************************************************.55********************** PP GRAS 371 SaW 373 SaW LOC_Os07g39470.1 541 SAW 543 *** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 69.271 | 148 | 525 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.3E-131 | 174 | 543 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 545 aa Download sequence Send to blast |
MADTPTSRMI HPFSNIPSQN LKQFQYSDNP QHPCHPYRAP SDTHVVPHHY GLKSHSPDAG 60 YESQATPNKY TLDSSEGAGC MRHDSPSSQS FTTRSGSPLS QEDSHSDSTD GSPVGASCVT 120 EDPNDLKQKL KDLEAVMLGP DSEIVNSLEN SVANQLSLEP EKWVRMMGIP RGNLKELLIA 180 CARAVEEKNS FAIDMMIPEL RKIVSVSGEP LERLGAYMVE GLVARLASSG ISIYKALKCK 240 EPKSSDLLSY MHFLYEACPY FKFGYMSANG AIAEAVKGED RIHIIDFHIS QGAQWISLLQ 300 ALAARPGGPP TVRITGIDDS VSAYARGGGL ELVGRRLSHI ASLCKVPFEF HPLAISGSKV 360 EAAHLGVIPG EALAVNFTLE LHHIPDESVS TANHRDRLLR MVKSLSPKVL TLVEMESNTN 420 TAPFPQRFAE TLDYYTAIFE SIDLTLPRDD RERINMEQHC LAREIVNLIA CEGEERAERY 480 EPFGKWKARL TMAGFRPSPL SSLVNATIRT LLQSYSDNYK LAERDGALYL GWKSRPLVVS 540 SAWH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 9e-66 | 178 | 544 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.10061 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 156764294 | 0.0 | ||||
Expression Atlas | Q8GVE1 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g39470.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g39470 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073470 | 0.0 | AK073470.1 Oryza sativa Japonica Group cDNA clone:J033044I02, full insert sequence. | |||
GenBank | AK098890 | 0.0 | AK098890.1 Oryza sativa Japonica Group cDNA clone:J013001M01, full insert sequence. | |||
GenBank | AP003747 | 0.0 | AP003747.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1127_E01. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 0.0 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646745.1 | 0.0 | chitin-inducible gibberellin-responsive protein 2 | ||||
Swissprot | Q8GVE1 | 0.0 | CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2 | ||||
TrEMBL | A0A0E0QAE8 | 0.0 | A0A0E0QAE8_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2YN28 | 0.0 | A2YN28_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1QEP3 | 0.0 | I1QEP3_ORYGL; Uncharacterized protein | ||||
STRING | ORUFI07G20980.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS07T0583600-01 | 0.0 | (Oryza sativa) | ||||
STRING | ORGLA07G0258500.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1513 | 37 | 117 | Representative plant | OGRP1409 | 14 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g39470.1 |
Entrez Gene | 4343735 |
Publications ? help Back to Top | |||
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