PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g39310.1 | ||||||||
Common Name | LOC107276408, OJ1301_C12.8, OsJ_24890, P0453G03.32 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 634aa MW: 67636.1 Da PI: 6.0185 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.6 | 1e-05 | 59 | 81 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F r nL+ H r H LOC_Os07g39310.1 59 FVCEVCGKGFQRDQNLQLHRRGH 81 89*******************88 PP | |||||||
2 | zf-C2H2 | 15.6 | 4.6e-05 | 137 | 159 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk++ + +Lk H +t+ LOC_Os07g39310.1 137 WTCQRCGKRYAVQADLKAHTKTC 159 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.0E-8 | 58 | 81 | No hit | No description |
SMART | SM00355 | 0.014 | 59 | 81 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.635 | 59 | 81 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.4E-5 | 59 | 81 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 61 | 81 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 88 | 102 | 132 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.6E-4 | 125 | 158 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.0E-8 | 132 | 157 | No hit | No description |
SMART | SM00355 | 90 | 137 | 157 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.787 | 137 | 165 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 634 aa Download sequence Send to blast |
MPPNPTGTEG EPGPAVEPAP AGAGAAPVVK KKRNLPGTPD PDAEVIALSP GTLLATNRFV 60 CEVCGKGFQR DQNLQLHRRG HNLPWRLRQR GPGAAPPRRR VYVCPEPGCV HHNPTRALGD 120 LTGIKKHFCR KHGEKRWTCQ RCGKRYAVQA DLKAHTKTCG TREYRCDCGT LFTRRDSFVT 180 HRAFCGALVE ETGRVLAVPA PPSPRPPDLE AEENVDKDKD KEEEVKEKEK EKELEENEDS 240 PVAEVDEPQP SQAVAEVPQQ CAPSPPPPPP ILQEHPQPVV AVVPNVDEQE VVAKPAVIAK 300 IEVEDERDEE VCFQEVDRYK DAELEDSNLL DNDTPMLPCF LPSPSEAIGT DGSSTSCGTG 360 SSVTNAIAPA TTTSTFAGLF ASVTTSSTPQ SRSLRDLIGV DPTFLCLAIG APSSLFPQTN 420 ASDPCSFAPP PAPHMSATAL LQKAAEVGAS QSSSSFLKEF GLAASTSSSP PSKLSQGRFT 480 TGNTPTTSHP HPHPHPHPHP PQGRFMDNVP QPPPPAKLPH RMFTDNSVQQ WHHRSNQQME 540 MEPGPMLPGG LGLGLTYDTG NSGLPDLMMG PSALYGPKPA TLDFLGLGIG GTMGGSTANG 600 GLPALMVGGE LDMGSAQAPW EEAKRKTNGR TIL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 9e-30 | 133 | 195 | 3 | 65 | Zinc finger protein JACKDAW |
5b3h_F | 9e-30 | 133 | 195 | 3 | 65 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.60947 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q7XI88 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g39310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g39310 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004185 | 0.0 | AP004185.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1301_C12. | |||
GenBank | AP004276 | 0.0 | AP004276.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0453G03. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647948.1 | 0.0 | protein indeterminate-domain 1 | ||||
TrEMBL | Q7XI88 | 0.0 | Q7XI88_ORYSJ; Zinc finger protein-like protein | ||||
STRING | OGLUM07G19790.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11829 | 28 | 36 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 4e-93 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g39310.1 |
Entrez Gene | 107276408 |