PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g38750.1 | ||||||||
Common Name | LOC107277023, OJ1562_B11.121, OJ1699_E05.42 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 316aa MW: 33367.1 Da PI: 7.4217 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.7 | 2.5e-17 | 49 | 99 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++ GVr+++ +grWvAeI+d + ++ r +lg+f ta+ Aa+a+++a++ l+g LOC_Os07g38750.1 49 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETADAAARAYDEAARLLRG 99 79********.7*********32...35***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.1E-11 | 49 | 99 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-19 | 49 | 108 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.50E-17 | 49 | 107 | No hit | No description |
PROSITE profile | PS51032 | 19.849 | 50 | 107 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-33 | 50 | 113 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-27 | 50 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-7 | 51 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-7 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MELNFQVQPP VFQLQDYCYY YSQEVAAAAS PAAKPTKPRG RKKGSTSHSK FVGVRQRPSG 60 RWVAEIKDTT QKIRMWLGTF ETADAAARAY DEAARLLRGA EARTNFAPRI SPDCPLAVRI 120 RGILHHKKLK KARSAAAATA GSPGAASKKR STTAAAAAAT PTITTTSNSN SDGAGSACGG 180 SSSSSSSTDS CDGAVKQGGG GGGAPTDASE VYRPDFVHAG AEEFDSWMFD TAFGPFPELD 240 SFAAVDAVTP PPATASPEES SAGTPPVEMA EFERIKVERR ISASLYAMNG LQEYFDKVFD 300 ASACDPFWDF SPLCH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-13 | 47 | 106 | 11 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q6ZL38 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g38750.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g38750 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003758 | 0.0 | AP003758.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1562_B11. | |||
GenBank | AP003845 | 0.0 | AP003845.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1699_E05. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646240.1 | 0.0 | ethylene-responsive transcription factor ERN1 | ||||
TrEMBL | A0A0E0ALR6 | 0.0 | A0A0E0ALR6_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0I2P5 | 0.0 | A0A0E0I2P5_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0QA81 | 0.0 | A0A0E0QA81_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2YMX7 | 0.0 | A2YMX7_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1QEI8 | 0.0 | I1QEI8_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q6ZL38 | 0.0 | Q6ZL38_ORYSJ; Putative AP2 domain containing protein | ||||
STRING | OGLUM07G19400.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | ORUFI07G20430.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ONIVA07G17970.1 | 0.0 | (Oryza nivara) | ||||
STRING | ORGLA07G0253000.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3900 | 32 | 73 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 5e-22 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g38750.1 |
Entrez Gene | 107277023 |