PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g38410.1 | ||||||||
Common Name | LOC9268430, Os07g0571800, OsJ_023849, YAB7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | YABBY | ||||||||
Protein Properties | Length: 170aa MW: 18036.4 Da PI: 7.9467 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 131.2 | 1.3e-40 | 12 | 163 | 6 | 169 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 e++ vqC+fC t+l+vsvP +s+++vv+v+CGhC+ +ls ++ ++a+ + l+ +el + +e++ + + + LOC_Os07g38410.1 12 LRERLGCVQCSFCATVLLVSVPCSSVLRVVAVQCGHCSGILS-AVNLPPSPVSASIE----LT---PQELDAGPPPGEYSDESSGDDR-EGR- 94 5689999***********************************.33322222222222....22...2333333333332222222222.222. PP YABBY 99 eklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 + ++d +p + +++PP ++qr Psayn+f+keei+rik+ P+i+h++afs+aaknWah+P+i + LOC_Os07g38410.1 95 ---DAEDDAPAPAAAAvANKPPGRKQRTPSAYNCFVKEEIKRIKSMEPNITHKQAFSTAAKNWAHLPRIQQK 163 ...334444444444438**************************************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.7E-45 | 13 | 162 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 9.82E-8 | 106 | 159 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 4.9E-5 | 111 | 162 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage | ||||
PO:0007606 | developmental stage | gynoecium development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MSSAARHHCS GLRERLGCVQ CSFCATVLLV SVPCSSVLRV VAVQCGHCSG ILSAVNLPPS 60 PVSASIELTP QELDAGPPPG EYSDESSGDD REGRDAEDDA PAPAAAAVAN KPPGRKQRTP 120 SAYNCFVKEE IKRIKSMEPN ITHKQAFSTA AKNWAHLPRI QQKRGRDSC* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.47781 | 1e-118 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32982641 | 1e-118 | ||||
Expression Atlas | A2PZN8 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g38410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g38410 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB274019 | 0.0 | AB274019.1 Oryza sativa Japonica Group OsYABBY7 mRNA for OsYABBY7 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647119.1 | 1e-122 | protein YABBY 7 isoform X2 | ||||
Swissprot | A2PZN8 | 1e-123 | YAB7_ORYSJ; Protein YABBY 7 | ||||
TrEMBL | I1QEG0 | 1e-121 | I1QEG0_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA07G0250200.1 | 1e-121 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13625 | 28 | 31 | Representative plant | OGRP13973 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 2e-26 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g38410.1 |
Entrez Gene | 9268430 |
Publications ? help Back to Top | |||
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