PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g38090.1 | ||||||||
Common Name | LOC4343641, OJ1092_A07.129, Os07g0568300, OsJ_023829 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C3H | ||||||||
Protein Properties | Length: 658aa MW: 69391.9 Da PI: 7.0719 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.9 | 3.6e-08 | 278 | 300 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++f+r G C+ Gd+C F+Hg LOC_Os07g38090.1 278 VPCPNFRRPGGCPSGDSCEFSHG 300 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 4.42E-13 | 66 | 147 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 6.9E-15 | 66 | 148 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.66 | 68 | 99 | IPR002110 | Ankyrin repeat |
Pfam | PF12796 | 4.8E-8 | 68 | 136 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 9.217 | 68 | 100 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 18.908 | 68 | 144 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.44E-12 | 70 | 147 | No hit | No description |
PROSITE profile | PS50088 | 12.529 | 104 | 139 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0044 | 104 | 136 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50103 | 13.995 | 274 | 302 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-4 | 274 | 301 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-5 | 275 | 303 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-6 | 278 | 301 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-6 | 278 | 300 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-4 | 306 | 339 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 21 | 310 | 333 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 658 aa Download sequence Send to blast |
MGELADLVVV PSQPPLAGGR RDRLAALLEL AAADDVDGLR GALAEGGEEA AELADGVGLW 60 YGRSKAYEAR TPLMVAATYG SAGVVSLLVG LGGCVDVNRR PGADGATALH CAASGGSRNA 120 VAVVKLLLAA GADPATPDSA GRFPADVILA PPASPDALGD LEVLLGRRRA LAVATSVASG 180 SSSPPLSSSP DEGNRSPSSR SSSLSPITVD RGKKEYPVDP TLPDIKSSVY ASDEFRMFAF 240 KVRPCSRAYS HDWTECPFVH PGENARRRDP RKHPYTAVPC PNFRRPGGCP SGDSCEFSHG 300 VFESWLHPSQ YRTRLCKEGA ACARRICFFA HDEDELRHVP HNSGAGLLSP RASSSIDMTA 360 AAALGLLPGS PTRHFAPPPV SPSAGSNGGA AAAHWLQGSR LRSSFNARDA AVDDLGMLLE 420 WESQYLGALC LPPSSRPQPR LSAGLSIRPT IAPSNLEDMY ASDMAMSPRF PNDQGHSVYS 480 PAHKSALLNK LHQQKGLLSP VNTNRMYSPR ALDPSSLAHS PFGGMSPRSP RTMEPTSPLS 540 ARVGAPATQR PSVGSPRNSS AWGTVGSPMG KVDWGVDSEE LVRLRRPAQP GFGEDETDVS 600 WVQSLVSNAE LNGKRGEVQG MPGTSALMNR PDLNNQGDLL DQTVIGAWLE QMHLDQK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5elk_A | 4e-11 | 240 | 333 | 14 | 118 | RING finger protein unkempt homolog |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.14948 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32977913 | 0.0 | ||||
Expression Atlas | Q84SL2 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g38090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g38090 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003866 | 0.0 | AP003866.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1092_A07. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647507.1 | 0.0 | zinc finger CCCH domain-containing protein 50 | ||||
Refseq | XP_015647508.1 | 0.0 | zinc finger CCCH domain-containing protein 50 | ||||
Swissprot | Q84SL2 | 0.0 | C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50 | ||||
TrEMBL | A0A0E0QA21 | 0.0 | A0A0E0QA21_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI07G19920.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS07T0568300-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP823 | 37 | 126 | Representative plant | OGRP709 | 15 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 1e-124 | CCCH-type zinc finger protein with ARM repeat domain |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g38090.1 |
Entrez Gene | 4343641 |
Publications ? help Back to Top | |||
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