PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g32110.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 823aa    MW: 94493 Da    PI: 9.5554
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g32110.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1522.3e-1690170190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       +fYn YA + GF +r +k++ +  n++ t+r+ +Cs +gk++++k+          + r+gC a++k++++k  g w vtk++  Hn ++ 
  LOC_Os07g32110.1  90 NFYNVYAISKGFGIRLNKERLN-VNKQRTMRQICCSHQGKNTNTKEP---------SIRIGCPAMIKINRSKgAGSWTVTKVVAAHNYPMK 170
                       6****************99998.77779*************997655.........9***************9**************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-1290169IPR004330FAR1 DNA binding domain
PfamPF105516.8E-10312357IPR018289MULE transposase domain
PROSITE profilePS5096610.163548584IPR007527Zinc finger, SWIM-type
SMARTSM005751.3E-5559586IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 823 aa     Download sequence    Send to blast
MEEDVSLTVG SHDSGHGTPK YAPSLDWTEG NPAEKEGAGI PMERLNEYNL FRMVVDNVDS  60
SAAIPPEYAD PNILAPALGQ RFKTERDTFN FYNVYAISKG FGIRLNKERL NVNKQRTMRQ  120
ICCSHQGKNT NTKEPSIRIG CPAMIKINRS KGAGSWTVTK VVAAHNYPMK KSIGVTMNYH  180
SHNQIDEGTR GIIEEMVDNS MSLTNMYGLL SGMHGGASIV PFTRKAMDRL AYAIRRDECS  240
DDMQKTLNVL KDLQKRSKNF FYSIQLDEAC RMKNIFWSHA VSRLNYEHFG DVITFDTTYK  300
TNRYNMPFAP FVGTFKECMN GKEPIGILTD NCPSMAAAIR KVFPNTIHRV CKWHVLKKAK  360
EFMGNIYSKR RSFKKAFHKV LTQTLTEEDF EAAWHKLISD YQLENSVYLR HIWDIRRKWA  420
FVYFAHRFFA GMTTTQRSES ANHVFKMFVK PSSSMNRFVK RYDRFFNEKL QKDDSEEFQT  480
SNDKVEIKTS SPIEIHASQV YTRAVFQLFS EELTDSLSYM VKPREDESTV QVVRMCTEES  540
SSFLRKEYQV YYDVEREEFS CVCKMFEHKG ILCSHVFRVL VQYGLSKIPD RYILKRWTKN  600
ARDSVPPHLH GYKDDVDASQ SRSYRHVMLN KKSVEVASVA NKDVQTFKMA MTVMNQLLED  660
MKSRLSLDDD DNSGAAPKRA TRQISRPTVL SEDGNEDVGA ADVDSVYDMS SEEESGDNTG  720
DVLPPVRKRS RGRPKVNRYK SGGEAASMKR RKEGVKRVKQ QMRVIPLKKK TKTMIMRMKC  780
LFLVGFATHA TKQDIIQEPA AGCLCTRENF SIWFIVVLYS PF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g32110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g32110
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0051860.0AP005186.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0430F03.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880431.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLQ53QA10.0Q53QA1_ORYSJ; Transposon protein, putative, unclassified
STRINGOS04T0354200-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-98FAR1-related sequence 5