PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g31420.2
Common NameLOC4343296, OJ1457_D07.122, P0005E02.103
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 745aa    MW: 85024.3 Da    PI: 5.1369
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g31420.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1674.8e-2158144190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       +fY +Y+ + GF ++++++++   +g  +++tf Csk g+++ ++ +  +++ ++  t+tgCkak+ vk  + +++wev+ leleHnH+l 
  LOC_Os07g31420.2  58 QFYVSYGCRSGFGITRRSNNTF--DGFRYRSTFICSKGGQSRLRSGA--TRSARKRGTKTGCKAKMIVKDAHfQNRWEVIVLELEHNHPLD 144
                       6****************99988..9999***************9999..77778889***************9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.7E-1958145IPR004330FAR1 DNA binding domain
PfamPF105512.3E-15272352IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MEEEEYNTES SNEEDMQEDD GEKQGNVAEG DIFKPVDIDP AFVPKVGMVF ESEEDAFQFY  60
VSYGCRSGFG ITRRSNNTFD GFRYRSTFIC SKGGQSRLRS GATRSARKRG TKTGCKAKMI  120
VKDAHFQNRW EVIVLELEHN HPLDPSLLKF KKQLKNSPFL QNPPLMLEAP DSSSAAALSS  180
RGGDSGIPLS TQIEFRTKID RNRKLKLAEG DLDALLSFLN KMQDQNPYFF YSLDMNEQGQ  240
LRNVFWADAK SRSSYNYFGD VVAINVRNFS DQYEIQFVSF VGTNHHAQQV LLGCGLLAGR  300
SLGAYVWLFD TWVRCMNSTP PPSVITNYCH DVAIAVKKVF PNARYRFCLL DILNELPEKL  360
EETEKKDEIV SAFSSLAFDS ITMPDFDKDW QEMVEQFHLE GNEWLSKLFE VRTQWAPVYV  420
KDSFWAGMSI TERSDSASDY FDGWLMPDTS VKMFVEQYES AVKVKLEKEN YEDLRSSQMR  480
PPVMTGVSVE EQAAKMYTLE IFQKFLDEIG HSFHCNYSIL DRNESVVTYI VSDHIDETKK  540
VDYKVAYDNV EDDILCLCRL FQFKEVVEFG SVNSESKGYA LSIMREIRDK VISYEKSLRD  600
QRVDSHVSTA NFAYNPVNED FNDDTLPISL STKGWDVVQG QSKRSRKKKL ATPNVLDTLK  660
KKTKRAYNKR RNAMANTLNT AVTTTESITD ATNHNQVNEG WPLTSTGAHE TFPYGVETIS  720
FDLSQYNSAP SFHWPESSSR SQLQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.583910.0callus| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976072610.0
Expression AtlasQ8LHZ8-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g31420.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g31420
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039560.0AP003956.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1457_D07.
GenBankAP0042590.0AP004259.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0005E02.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647702.10.0protein FAR1-RELATED SEQUENCE 6 isoform X2
TrEMBLQ8LHZ80.0Q8LHZ8_ORYSJ; Putative far-red impaired response protein
STRINGORGLA07G0123700.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.15e-84FAR1-related sequence 8