PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g31420.1
Common NameLOC4343296, OsJ_24335
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 812aa    MW: 92811.3 Da    PI: 5.5017
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g31420.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.95.4e-2158144190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       +fY +Y+ + GF ++++++++   +g  +++tf Csk g+++ ++ +  +++ ++  t+tgCkak+ vk  + +++wev+ leleHnH+l 
  LOC_Os07g31420.1  58 QFYVSYGCRSGFGITRRSNNTF--DGFRYRSTFICSKGGQSRLRSGA--TRSARKRGTKTGCKAKMIVKDAHfQNRWEVIVLELEHNHPLD 144
                       6****************99988..9999***************9999..77778889***************9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.6E-1958145IPR004330FAR1 DNA binding domain
PfamPF105512.6E-15272352IPR018289MULE transposase domain
PfamPF044341.6E-6543575IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.409543579IPR007527Zinc finger, SWIM-type
SMARTSM005756.3E-5554581IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
MEEEEYNTES SNEEDMQEDD GEKQGNVAEG DIFKPVDIDP AFVPKVGMVF ESEEDAFQFY  60
VSYGCRSGFG ITRRSNNTFD GFRYRSTFIC SKGGQSRLRS GATRSARKRG TKTGCKAKMI  120
VKDAHFQNRW EVIVLELEHN HPLDPSLLKF KKQLKNSPFL QNPPLMLEAP DSSSAAALSS  180
RGGDSGIPLS TQIEFRTKID RNRKLKLAEG DLDALLSFLN KMQDQNPYFF YSLDMNEQGQ  240
LRNVFWADAK SRSSYNYFGD VVAINVRNFS DQYEIQFVSF VGTNHHAQQV LLGCGLLAGR  300
SLGAYVWLFD TWVRCMNSTP PPSVITNYCH DVAIAVKKVF PNARYRFCLL DILNELPEKL  360
EETEKKDEIV SAFSSLAFDS ITMPDFDKDW QEMVEQFHLE GNEWLSKLFE VRTQWAPVYV  420
KDSFWAGMSI TERSDSASDY FDGWLMPDTS VKMFVEQYES AVKVKLEKEN YEDLRSSQMR  480
PPVMTGVSVE EQAAKMYTLE IFQKFLDEIG HSFHCNYSIL DRNESVVTYI VSDHIDETKK  540
VDYKVAYDNV EDDILCLCRL FQFKGILCRH ALTVLRQEFV PMIPPKYIIH RWCKDCKQTC  600
SSMSQPVSLS NQETGGYDDL YKLTHQYFTE VVEFGSVNSE SKGYALSIMR EIRDKVISYE  660
KSLRDQRVDS HVSTANFAYN PVNEDFNDDT LPISLSTKGW DVVQGQSKRS RKKKLATPNV  720
LDTLKKKTKR AYNKRRNAMA NTLNTAVTTT ESITDATNVQ HNQVNEGWPL TSTGAHETFP  780
YGVETISFDL SQYNSAPSFH WPESSSRSQL Q*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.583910.0callus| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976072610.0
Expression AtlasB9FXD0-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g31420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g31420
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039560.0AP003956.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1457_D07.
GenBankAP0042590.0AP004259.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0005E02.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647701.10.0protein FAR1-RELATED SEQUENCE 6 isoform X1
TrEMBLB9FXD00.0B9FXD0_ORYSJ; Uncharacterized protein
TrEMBLI1QAU50.0I1QAU5_ORYGL; Uncharacterized protein
STRINGORGLA07G0123700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1398944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.12e-99FAR1-related sequence 6