PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g31410.1 | ||||||||
Common Name | OJ1457_D07.120, P0005E02.101 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 212aa MW: 22050.9 Da PI: 10.0233 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 37.8 | 5.6e-12 | 11 | 147 | 4 | 127 |
NAM 4 Gfr..FhPtdeelvveyLkkkvegkk..leleevikev.diykvePwdLpk.....kvkaeekewyfFskrdkkya.....tgkrknratk.. 79 Gfr F P+d++l+++ L++k+++ + +++ +++v d + + P +L + +++ + wyfFs r ++ a +++ ++ra+ LOC_Os07g31410.1 11 GFRipFLPSDSDLLDCLLRPKIASGRvdPRFAPLVHDVaDAFALPPAQLAAahapaPGAGGAEAWYFFSVRPRARAraragSKRAASRAVGgg 103 6665599****************9995433334599999**********843454422236779*****999988833322222344444433 PP NAM 80 .sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 +W + g +k+v g + + + + +a + +W+m ey LOC_Os07g31410.1 104 gGKRWCSMGAKKAVEG-----GGYCQRFRYKERTAAGVVAPRWMMVEYG 147 2335******999977.....57889999998888888999*******6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 20.173 | 10 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-9 | 12 | 147 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-22 | 15 | 177 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MAPLADPAAE GFRIPFLPSD SDLLDCLLRP KIASGRVDPR FAPLVHDVAD AFALPPAQLA 60 AAHAPAPGAG GAEAWYFFSV RPRARARARA GSKRAASRAV GGGGGKRWCS MGAKKAVEGG 120 GYCQRFRYKE RTAAGVVAPR WMMVEYGVAQ EHDGEGVAQE HGGEGVAELV LCKIFRSPEP 180 SRRSESGSPS SSSSASASPS CSGGRKRKAA E* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.52907 | 1e-48 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32979873 | 1e-48 | ||||
Expression Atlas | Q8LI00 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g31410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g31410 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003956 | 0.0 | AP003956.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1457_D07. | |||
GenBank | AP004259 | 0.0 | AP004259.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0005E02. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006658578.1 | 4e-55 | PREDICTED: NAC domain-containing protein 72-like | ||||
TrEMBL | A0A0E0Q8K5 | 1e-146 | A0A0E0Q8K5_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q8LI00 | 1e-146 | Q8LI00_ORYSJ; Uncharacterized protein | ||||
STRING | ORUFI07G15560.1 | 1e-147 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15395 | 10 | 17 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g31410.1 |