PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g31400.1
Common NameLOC9271882, Os07g0496300, OSNPB_070496300
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 856aa    MW: 94074 Da    PI: 7.0764
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g31400.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.39.1e-2282178190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......tekerr....traetrtgCkaklkvkkek.dgkwevtkl 81 
                       +fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk        +    +    + + +rtgC a+l++k+    + ++vt++
  LOC_Os07g31400.1  82 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPpqdeaaaA----SppppRCPDSRTGCLASLTIKLLPsANAFRVTDF 169
                       6*****************99997666.****************999966544433....145548899*************99899******* PP

              FAR1  82 eleHnHela 90 
                        +eHnH+la
  LOC_Os07g31400.1 170 ATEHNHPLA 178
                       *******97 PP
2FAR171.22.5e-22226325290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 
                       fYn+YA++vGFsvr+s++k++   g i++r fvCs+eg +++ k++             + + r   + trtgC+a++++k +   +++v+k+
  LOC_Os07g31400.1 226 FYNRYAEHVGFSVRRSYKKRK--RGVIVSRIFVCSREGVSDRAKHEsiaivsnnastgpSGTPRPGPPPTRTGCQARMVIKITPCRTYRVAKF 316
                       9*************9976665..999**************9999999****999998877777778899************************ PP

              FAR1  82 eleHnHela 90 
                       + eHnH+la
  LOC_Os07g31400.1 317 VPEHNHPLA 325
                       *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.4E-1982178IPR004330FAR1 DNA binding domain
PfamPF031014.0E-19226325IPR004330FAR1 DNA binding domain
PfamPF105511.2E-23414508IPR018289MULE transposase domain
PfamPF044346.2E-6682728IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.225682729IPR007527Zinc finger, SWIM-type
SMARTSM005752.0E-6704731IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 856 aa     Download sequence    Send to blast
MSTAADPSSL SGDSSPTSSG DAESSSSPSS SAAAAGGSDD PAPVDQVVAS GSGAGGDGDA  60
AAAVPTSPRI GMYFETEEDA YEFYKAYAAR LGFVVRKSNK SKNSRHTVTR RLFVCSKQGF  120
RQEPKKPPQD EAAAASPPPP RCPDSRTGCL ASLTIKLLPS ANAFRVTDFA TEHNHPLASA  180
APAVSLALLP PSSSHHTIAA VASLPDPRDG PRTDMHFETE DDAYAFYNRY AEHVGFSVRR  240
SYKKRKRGVI VSRIFVCSRE GVSDRAKHES IAIVSNNAST GPSGTPRPGP PPTRTGCQAR  300
MVIKITPCRT YRVAKFVPEH NHPLANPDSV HKLRSHKMRA RAHELGAGEL HRRKHGKGVQ  360
LGDAGAVLEY LEELQVGNPS VYYAVGVGPD GKSAANFFWA DAESMIDYRS FGDVVCFDTT  420
YELNGYGRPF ALFVGVDNHK QMLVFGAALL YDESIESLKW VFKAFADAMC GKQPDTVLID  480
ERPECAMAAA EVWPRSSHCT SVWHIYHNSK RHLKQVFEGS KSFANALSHC LFECDDEVEF  540
LSAWEKLIEK HDVGENEWLN KLFLEKEKWA LPYWRALFSA DILTTLRKDN MINDIKRELS  600
EQEDILQFLR RYETMLEEHR SKKLQADVDG SQVTLPIPSL RMLKQASSAY TPEAFKMFQG  660
EFEAYMNCMS FPCGGLGTIS EYKITLDEKP SESIVKFDAL DGSATCSCRK FESVGIQCCH  720
VLKVLDLKNI KELPEQYILR RWRKDARSVR IGEEPSGGSS SMRSASEVRF STMCRFLSLI  780
ASRAARSEEA TSYIESQSSV LLKHLDDILQ TGYPDIGNHV VASSSQPISF VGNQLPDHTS  840
QARGVPQTTN GLMGV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.439950.0leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379890100.0
Expression AtlasC7J599-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g31400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g31400
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039560.0AP003956.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1457_D07.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647573.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLC7J5990.0C7J599_ORYSJ; Os07g0496300 protein
STRINGOS07T0496300-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1399044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-83FAR1-related sequence 5