PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g30774.1
Common NameLOC4343265, Os07g0490200, OSNPB_070490200, P0477A12.32
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family CAMTA
Protein Properties Length: 928aa    MW: 103614 Da    PI: 7.7507
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g30774.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1166.73.7e-52311463117
              CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                        e  +rw +++ei+aiL+n++++++++++ ++p sg+++Ly+rk+vr+frkDG++wkkkkdg+tv+E+hekLK+g+ e +++yYa++e++p+f
  LOC_Os07g30774.1  31 AEaAARWFRPNEIYAILANHARFKIHAQPVDKPVSGTVVLYDRKVVRNFRKDGHNWKKKKDGRTVQEAHEKLKIGNEERVHVYYARGEDDPNF 123
                       45589**************************************************************************************** PP

              CG-1  95 qrrcywlLeeelekivlvhylev 117
                        rrcywlL+++le+ivlvhy+++
  LOC_Os07g30774.1 124 FRRCYWLLDKDLERIVLVHYRQT 146
                       ********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143774.85826152IPR005559CG-1 DNA-binding domain
SMARTSM010762.9E-6329147IPR005559CG-1 DNA-binding domain
PfamPF038594.1E-4533145IPR005559CG-1 DNA-binding domain
SuperFamilySSF812967.14E-10375461IPR014756Immunoglobulin E-set
SuperFamilySSF484033.11E-17550674IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.2E-17560674IPR020683Ankyrin repeat-containing domain
CDDcd002044.08E-15560668No hitNo description
PROSITE profilePS5029717.953576680IPR020683Ankyrin repeat-containing domain
PfamPF127969.2E-8582672IPR020683Ankyrin repeat-containing domain
SMARTSM002489.6E-6609638IPR002110Ankyrin repeat
PROSITE profilePS5008811.835609641IPR002110Ankyrin repeat
SMARTSM00248580648677IPR002110Ankyrin repeat
SuperFamilySSF525407.7E-9725826IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500966.54760786IPR000048IQ motif, EF-hand binding site
SMARTSM000151.5775797IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.785776803IPR000048IQ motif, EF-hand binding site
PfamPF006120.002778796IPR000048IQ motif, EF-hand binding site
SMARTSM000150.016798820IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.274799823IPR000048IQ motif, EF-hand binding site
PfamPF006120.0092801820IPR000048IQ motif, EF-hand binding site
SMARTSM000152.4881903IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.084883911IPR000048IQ motif, EF-hand binding site
PfamPF006120.044884903IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 928 aa     Download sequence    Send to blast
MAGAGGWDPL VGSEIHGFLT YPDLNYEKLV AEAAARWFRP NEIYAILANH ARFKIHAQPV  60
DKPVSGTVVL YDRKVVRNFR KDGHNWKKKK DGRTVQEAHE KLKIGNEERV HVYYARGEDD  120
PNFFRRCYWL LDKDLERIVL VHYRQTAEEN AMAPPNPEPE VADVPTVNLI HYTSPLTSAD  180
STSGHTELSL PEEINSHGGI SASSETGNHD SSLEEFWANL LESSIKNDPK VVTSACGGSF  240
VSSQQINNGP KNSGNIVNTS MASNAIPALN VVSETYATNH GLNQVNANHF GALKHQGDQT  300
QSLLASDVDS QSDQFISSSV KSPMDGNTSI PNEVPARQNS LGLWKYLDDD SPGLGDNPSS  360
VPQSFCPVTN ERLLEINEIS PEWAYSTETT KVVVIGNFYE QYKHLAGSAM FGVFGEQCVA  420
GDIVQTGVYR FMVGPHTPGK VDFYLTLDGK TPISEICSFT YHVMHGSSLE ARLPPSEDDY  480
KRTNLKMQMR LARLLFATNK KKIAPKLLVE GTKVANLMSA LPEKEWMDLW NILSDPEGTY  540
VPVTESLLEL VLRNRLQEWL VEMVMEGHKS TGRDDLGQGA IHLCSFLGYT WAIRLFSLSG  600
FSLDFRDSSG WTALHWAAYH GRERMVATLL SAGANPSLVT DPTPESPAGL TAADLAARQG  660
YDGLAAYLAE KGLTAHFEAM SLSKDTEQSP SKTRLTKLQS EKFEHLSEQE LCLKESLAAY  720
RNAADAASNI QAALRERTLK LQTKAIQLAN PEIEASEIVA AMKIQHAFRN YNRKKAMRAA  780
ARIQSHFRTW KMRRNFINMR RQVIRIQAAY RGHQVRRQYR KVIWSVGIVE KAILRWRKKR  840
KGLRGIASGM PVVMTVDAEA EPASTAEEDF FQAGRQQAED RFNRSVVRVQ ALFRSYKAQQ  900
EYRRMKIAHE EAKIEFSEGQ LGAACRS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.884220.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329809990.0
Expression AtlasQ7XHR2-
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g30774.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g30774
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0709760.0AK070976.1 Oryza sativa Japonica Group cDNA clone:J023073E17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646432.10.0calmodulin-binding transcription activator CBT-like isoform X2
SwissprotQ7XHR20.0CBT_ORYSJ; Calmodulin-binding transcription activator CBT
TrEMBLA0A0E0I0Z00.0A0A0E0I0Z0_ORYNI; Uncharacterized protein
STRINGOS07T0490200-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98312933
Representative plantOGRP73511116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators