PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g30130.3 | ||||||||
Common Name | LOC4343245, Os07g0484700, OSNPB_070484700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 168aa MW: 18223.5 Da PI: 10.6866 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.4 | 1.2e-16 | 90 | 137 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ l+ +++++G+g+W++++ g R+ k+c++rw +yl LOC_Os07g30130.3 90 KGPWTPEEDLMLASYIQEHGSGNWRAVPTNTGVMRCSKSCRLRWTNYL 137 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-21 | 88 | 140 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.751 | 88 | 141 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-12 | 89 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-16 | 90 | 137 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.9E-22 | 91 | 164 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.10E-11 | 92 | 137 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.8E-7 | 141 | 164 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009037 | anatomy | lemma | ||||
PO:0001047 | developmental stage | lemma development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MPDQRRGTTA LLPTARHGPA ASDRHHSASA ARRDAAATRP ATSVAAANTL VSSSLIEIES 60 THTPPTTGRP PRTGEQDGEA AVLRQGWVKK GPWTPEEDLM LASYIQEHGS GNWRAVPTNT 120 GVMRCSKSCR LRWTNYLRPG IKRGNFTEQE EKLIVHLQAL LGNRSLP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-13 | 90 | 164 | 7 | 80 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.26708 | 0.0 | leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32976043 | 0.0 | ||||
Expression Atlas | Q0D6F7 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g30130.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g30130 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066025 | 0.0 | AK066025.1 Oryza sativa Japonica Group cDNA clone:J013044E03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647825.1 | 1e-120 | transcription factor MYB101 isoform X1 | ||||
Refseq | XP_015647826.1 | 1e-120 | transcription factor MYB101 isoform X1 | ||||
Refseq | XP_015647827.1 | 1e-120 | transcription factor MYB101 isoform X1 | ||||
Refseq | XP_015647828.1 | 1e-120 | transcription factor MYB101 isoform X1 | ||||
Refseq | XP_015647829.1 | 1e-120 | transcription factor MYB101 isoform X1 | ||||
Refseq | XP_015647830.1 | 1e-120 | transcription factor MYB101 isoform X1 | ||||
Refseq | XP_015647831.1 | 1e-120 | transcription factor MYB101 isoform X1 | ||||
Refseq | XP_015647832.1 | 1e-120 | transcription factor MYB101 isoform X1 | ||||
Refseq | XP_015647833.1 | 1e-120 | transcription factor MYB101 isoform X1 | ||||
Refseq | XP_015647834.1 | 1e-120 | transcription factor MYB101 isoform X1 | ||||
Refseq | XP_015647835.1 | 1e-120 | transcription factor MYB101 isoform X1 | ||||
Refseq | XP_015647836.1 | 1e-120 | transcription factor MYB101 isoform X1 | ||||
Refseq | XP_015647837.1 | 1e-120 | transcription factor MYB101 isoform X1 | ||||
Refseq | XP_015647838.1 | 1e-120 | transcription factor MYB101 isoform X1 | ||||
Refseq | XP_015647840.1 | 1e-120 | transcription factor MYB101 isoform X1 | ||||
Refseq | XP_025882556.1 | 1e-120 | transcription factor MYB101 isoform X1 | ||||
TrEMBL | Q0D6F7 | 1e-119 | Q0D6F7_ORYSJ; Os07g0484700 protein | ||||
STRING | OS07T0484700-01 | 1e-120 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28910.1 | 1e-48 | myb domain protein 30 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g30130.3 |
Entrez Gene | 4343245 |