PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g28430.1 | ||||||||
Common Name | GRF11, LOC4343178, Os07g0467500, OsJ_24174, P0003B09.18 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GRF | ||||||||
Protein Properties | Length: 270aa MW: 28001 Da PI: 4.4802 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 73.8 | 1.9e-23 | 180 | 224 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRC+r++++++k+CErH+hrgr+r + ++e LOC_Os07g28430.1 180 EPEPGRCRRTDGKKWRCWRNAIANEKYCERHMHRGRKRPVQLVVE 224 69************************************9998875 PP | |||||||
2 | QLQ | 54.3 | 4.2e-19 | 114 | 149 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 aFTa+Qlq+L++Q +y+y+aa++PvP +L+++i+k LOC_Os07g28430.1 114 AFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 149 8*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.7E-8 | 113 | 149 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.4E-12 | 114 | 148 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.922 | 114 | 149 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 22.302 | 180 | 224 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.3E-19 | 181 | 219 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009066 | anatomy | anther | ||||
PO:0001004 | developmental stage | anther development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MAAEGEAKKD SASNPPGGGG GGGGGEEEED SSLAVGEAAV GVGEAGGGGG GGEKADREEE 60 EGKEDVEEGG VCKDLVLVED AVPVEDPEEA AATAALQEEM KALVESVPVG AGAAFTAMQL 120 QELEQQSRVY QYMAARVPVP THLVFPIWKS VTGASSEGAQ KYPTLMGLAT LCLDFGKNPE 180 PEPGRCRRTD GKKWRCWRNA IANEKYCERH MHRGRKRPVQ LVVEDDEPDS TSGSKPASGK 240 ATEGGKKTDD KSSSSKKLAV AAPAAVEST* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.5329 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32976418 | 0.0 | ||||
Expression Atlas | Q6AWX8 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g28430.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g28430 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066400 | 0.0 | AK066400.1 Oryza sativa Japonica Group cDNA clone:J013062O07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644678.1 | 0.0 | growth-regulating factor 11 | ||||
Swissprot | Q6AWX8 | 0.0 | GRF11_ORYSJ; Growth-regulating factor 11 | ||||
TrEMBL | A0A0E0I0C2 | 0.0 | A0A0E0I0C2_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2YL38 | 0.0 | A2YL38_ORYSI; Uncharacterized protein | ||||
STRING | OS07T0467500-01 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA07G11690.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6735 | 31 | 52 | Representative plant | OGRP11936 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 1e-29 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g28430.1 |
Entrez Gene | 4343178 |
Publications ? help Back to Top | |||
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